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Merge branch 'Release_2_9_Branch'
2015-09-10 Jim ProcterMerge branch 'Release_2_9_Branch'
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2015-09-10 Jim ProcterMerge branch 'develop' into Release_2_9_Branch
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2015-09-10 Jim ProcterJAL-1645 fix broken link in docs
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2015-09-10 Jim ProcterMerge branch 'release/JAL-1645_r29' into Release_2_9_Branch
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2015-09-10 Jim ProcterJAL-1684 ahem - omit the example title too :)
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2015-09-10 Jim ProcterMerge branch 'release/JAL-1645_r29' into Release_2_9_Branch
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2015-09-10 Jim ProcterJAL-1684 defer split frame applet example for the 2...
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2015-09-10 Jim ProcterMerge branch 'release/JAL-1645_r29' into Release_2_9_Branch
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2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensing...
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2015-09-10 Jim ProcterMerge branch 'develop' into Release_2_9_Branch
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2015-09-10 Jim ProcterJAL-1645 reformat help html - 2 spaces indents, no...
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2015-09-10 Jim ProcterMerge branch 'develop' into Release_2_9_Branch
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2015-09-10 Jim ProcterJAL-1645 licencing for help html
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2015-09-10 Jim ProcterJAL-1645 licencing for doc directory files
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2015-09-10 Jim ProcterJAL-1645 licencing for groovy files
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2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils
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2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
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2015-09-10 Jim ProcterMerge branch 'develop' into Release_2_9_Branch
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2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
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2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
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2015-09-10 Jim ProcterJAL-1684 updated example to just a fragment of the...
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2015-09-10 Jim ProcterJAL-1645 add reference seq docs to index/etc
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2015-09-10 Jim ProcterJAL-1645 formatting and updated release date
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2015-09-10 Jim ProcterJAL-1645 formatting
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2015-09-10 Jim ProcterJAL-736 JAL-1645 brief documentation about physicochemical...
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2015-09-10 Jim ProcterMerge branch 'develop' into release/2_9_documentation
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2015-09-10 Jim ProcterJAL-1645 typo
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2015-09-10 Jim ProcterJAL-1645 JAL-1595 sort by RNA helices docs
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2015-09-10 Jim ProcterJAL-1645 more cross-links and fixing menu entries
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2015-09-10 Jim ProcterJAL-1645 links from whats New page
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2015-09-10 Jim ProcterJAL-1645 yet more documentation tweaks
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2015-09-10 Jim ProcterJAL-1370 correct i18n message for reference sequence...
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2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference...
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2015-09-10 Jim ProcterJAL-1370 mark Jpred query sequence as reference sequence
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2015-09-09 Jim ProcterJAL-1645 rejig annotation selection dialog box
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2015-09-09 Jim ProcterJAL-1645 rejig biojson/biojsmsa docs
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2015-09-09 Jim ProcterJAL-1645 documentation tweaks
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2015-09-09 Jim ProcterJAL-1645 rejig bioJSON, export and whats new
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2015-09-09 Jim ProcterJAL-1645 relocate developer info about BioJS MSA templates...
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2015-09-09 Jim ProcterJAL-1645 update 2.9 docs
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2015-09-09 Jim ProcterJAL-1645 JAL-1667 revised PDB sequence fetcher docs
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2015-09-09 Jim ProcterJAL-1645 update TOC for 2.9 what’s new
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2015-09-09 Jim ProcterJAL-1645 update release note link to v2.9
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2015-09-09 Jim ProcterJAL-1684 use Muscle protein alignment as guide for...
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2015-09-09 Jim ProcterMerge branch 'release/2_9_documentation' into develop
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2015-09-09 Jim ProcterJAL-1684 clarification of which alignment will be used...
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2015-09-09 Jim ProcterJAL-1684 aligned proteins and citation for for Estrogen...
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2015-09-09 Jim ProcterJAL-1645 formatting tree distance docs
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2015-09-09 Jim ProcterJAL-1483 more explicit description of feature similarity...
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2015-09-09 Jim ProcterJAL-1483 description of the sequence feature based...
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2015-09-08 Jim ProcterJAL-1645 Merge branch 'develop' into Release_2_9_Branch
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2015-09-08 Jim ProcterJAL-1645 Merge branch 'release/2_9_documentation' into...
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2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
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2015-09-08 Jim ProcterJAL-1645 defictionalising release notes
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2015-09-08 Jim ProcterJAL-1645 first stab at R2.9 “What’s new”
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2015-09-08 Jim ProcterJAL-1645 JAL-1701 fix up split frame docs and add a...
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2015-09-08 Jim ProcterJAL-1645 incorrect internal doc link
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2015-09-08 Jim ProcterJAL-1645 update appletParameters docs for 2.9
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2015-09-08 Jim ProcterJAL-1695 make enableSplitFrame applet parameter true...
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2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
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2015-09-08 Jim ProcterJAL-1626 added missing gap character and fixed typo...
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2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
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2015-09-08 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
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2015-09-08 Jim ProcterJAL-1551 crlf change
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2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation
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2015-09-08 Jim ProcterJAL-1645 draft release notes for v2.9...
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2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files...
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2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files...
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2015-09-07 Jim ProcterJAL-1645 Merge branch 'develop' into Release_2_9_Branch
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2015-09-07 Jim ProcterJAL-1522 report commit id and branch in installation...
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2015-09-07 Jim ProcterJAL-1522 make installation default 'applet' for the...
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2015-09-07 Jim ProcterJAL-1645 Merge branch 'develop' into Release_2_9_Branch
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2015-09-07 Jim ProcterJAL-1701 added links to example files. will probably...
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2015-09-06 Jim ProcterJAL-1655 transfer setting option only displayed in...
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2015-09-06 Jim ProcterJAL-1368 JAL-1863 JAL-1304 reformatting and revision...
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2015-09-06 Jim ProcterJAL-1368 JAL-1628 revise documentation in line with...
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2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,...
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2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour...
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2015-09-05 Jim ProcterJAL-1871 choose a new RNA Helices palette when annotation...
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2015-09-05 Jim ProcterJAL-1871 don’t change the palette every time an edit...
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2015-09-05 Jim ProcterJAL-1871 reinstate random generation of palette when...
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2015-09-05 Jim ProcterJAL-1869 make per-sequence RNA helix colours each time...
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2015-09-05 Jim ProcterMerge branch 'bugfix/JAL-841_JAL-1081' into develop
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2015-09-05 Jim ProcterJAL-1805 move misassigned test from Functional to Network
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2015-09-05 Jim ProcterJAL-1233 tidy up and use same RNA helix colours in...
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2015-09-05 Jim ProcterJAL-1081 JAL-891 don’t overwrite global colour scheme...
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2015-09-05 Jim ProcterJAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection...
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2015-09-04 Jim ProcterJAL-1847 Merge branch 'thiago' into develop
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2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be...
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2015-09-03 Jim ProcterJAL-1863 allow RNA secondary structure rows exported...
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2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates...
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2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consensus...
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2015-09-03 Jim ProcterJAL-1576 fix: trigger broadcast of colour change with...
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2015-09-03 Jim ProcterJAL-961 TODO use workers for calculations supporting...
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2015-09-03 Jim ProcterJAL-1551 source tidy
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2015-09-03 Jim ProcterJAL-1550 JAL-1551 formatting
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2015-09-03 Jim ProcterJAL-1233 JAL-1576 copy constructor to propagate helix...
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2015-09-02 Jim ProcterJAL-1853 add test to list for ant task
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2015-09-02 Jim ProcterJAL-535 todo: refactor logic to desktop controller...
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