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2019-06-20	Jim Procter	JAL-3111 signed off ’done’ issues in Jira as of now:	commit \| commitdiff \| tree
2019-06-20	Jim Procter	JAL-3111 JAL-3130 JAL-3235 Java 11 specific known defects...	commit \| commitdiff \| tree
2019-06-19	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-06-19	Jim Procter	JAL-3111 release notes for JAL-3313	commit \| commitdiff \| tree
2019-06-19	Jim Procter	JAL-3111 formatting	commit \| commitdiff \| tree
2019-06-19	Jim Procter	Merge branch 'develop' into documentation/JAL-3111_release_211	commit \| commitdiff \| tree
2019-06-19	Jim Procter	JAL-3111 release notes for JAL-27830 JAL-2876 JAL-2567...	commit \| commitdiff \| tree
2019-06-18	Jim Procter	Merge branch 'bug/JAL-2830_editManglesDatasetSequence...	commit \| commitdiff \| tree
2019-06-18	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-06-18	Jim Procter	Merge branch 'bug/JAL-2830_editManglesDatasetSequence...	commit \| commitdiff \| tree
2019-06-18	Jim Procter	JAL-3111 JAL-2446 mentioned in context with NCList...	commit \| commitdiff \| tree
2019-06-18	Jim Procter	JAL-3111 JAL-2684 JAL-2360 JAL-2416 release notes	commit \| commitdiff \| tree
2019-06-18	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-06-18	Jim Procter	JAL-3286 JAL-3111 release notes	commit \| commitdiff \| tree
2019-06-18	Jim Procter	Merge branch 'develop' into documentation/JAL-3111_release_211	commit \| commitdiff \| tree
2019-06-18	Jim Procter	Merge branch 'bug/JAL-3286duplicatePdbQuery' into develop	commit \| commitdiff \| tree
2019-06-18	Jim Procter	JAL-3111 JAL-3003 documentation note	commit \| commitdiff \| tree
2019-06-18	Jim Procter	JAL-2296 JAL-2295 document in release notes post feature...	commit \| commitdiff \| tree
2019-06-18	Jim Procter	JAL-3111 - new known issue JAL-3314	commit \| commitdiff \| tree
2019-06-18	Jim Procter	JAL-3111 release notes for JAL-3073 JAL-3042	commit \| commitdiff \| tree
2019-06-18	Jim Procter	JAL-3111 JAL-3080 documentation	commit \| commitdiff \| tree
2019-06-17	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-06-17	Jim Procter	JAL-3111 rejigged release notes again	commit \| commitdiff \| tree
2019-06-17	Jim Procter	JAL-2975,JAL-2647,JAL-1767,JAL-2965, JAL-3111 updated...	commit \| commitdiff \| tree
2019-06-14	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-06-14	Jim Procter	JAL-3111 release date now 20th June. more release note...	commit \| commitdiff \| tree
2019-06-14	Jim Procter	JAL-3111 report build type and commit in stdout from...	commit \| commitdiff \| tree
2019-06-14	Jim Procter	JAL-3299 JAL-3280 javadoc on BuildDetails bean	commit \| commitdiff \| tree
2019-06-14	Jim Procter	JAL-3111 report time when Jalview was built (consider...	commit \| commitdiff \| tree
2019-06-13	Jim Procter	Merge branch 'bug/JAL-3295_CMD_select_not_working_in_sequenc...	commit \| commitdiff \| tree
2019-05-13	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	commit \| commitdiff \| tree
2019-05-13	Jim Procter	Merge branch 'task/JAL-3247_Install4j_improvements...	commit \| commitdiff \| tree
2019-05-10	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	commit \| commitdiff \| tree
2019-05-10	Jim Procter	Merge branch 'task/JAL-3246_local_getdown_files' into...	commit \| commitdiff \| tree
2019-05-10	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	commit \| commitdiff \| tree
2019-05-10	Jim Procter	Merge branch 'task/JAL-3236_install4j_linux_unix_userland_in...	commit \| commitdiff \| tree
2019-05-09	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	commit \| commitdiff \| tree
2019-05-09	Jim Procter	Merge branch 'task/JAL-3246_local_getdown_files' into...	commit \| commitdiff \| tree
2019-05-08	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	commit \| commitdiff \| tree
2019-04-26	Jim Procter	JAL-3236 see also previous commit - tweak the install4j...	commit \| commitdiff \| tree
2019-04-26	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	commit \| commitdiff \| tree
2019-04-26	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	commit \| commitdiff \| tree
2019-04-26	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2019-04-26	Jim Procter	JAL-3150 examples/exampleFile.jvp for updated manual...	commit \| commitdiff \| tree
2019-04-24	Jim Procter	Merge branch 'task/JAL-3225_Integration_Gradle_building_into...	commit \| commitdiff \| tree
2019-04-24	Jim Procter	JAL-1929 JAL-3224 java 8 and java 11 specific getdown...	commit \| commitdiff \| tree
2019-04-24	Jim Procter	JAL-1929 JAL-3224 JRE getdown URLs must be relative...	commit \| commitdiff \| tree
2019-04-23	Jim Procter	JAL-3130 add JAVA_VERSION to shadowJar classifier so...	commit \| commitdiff \| tree
2019-04-23	Jim Procter	JAL-3130 make sure only libDistDir/*.jar are added...	commit \| commitdiff \| tree
2019-04-23	Jim Procter	Merge branch 'develop' into bug/JAL-3224_getdown_changed_to_...	commit \| commitdiff \| tree
2019-04-23	Jim Procter	JAL-1929 JAL-3224 getdown artefacts staged as getdown...	commit \| commitdiff \| tree
2019-04-23	Jim Procter	JAL-1929 JAL-3224 getdown channel structure is {build...	commit \| commitdiff \| tree
2019-04-22	Jim Procter	JAL-3224 JAL-3196 still trying to specify projectFile...	commit \| commitdiff \| tree
2019-04-22	Jim Procter	JAL-3224 JAL-3196 still trying to specify projectFile...	commit \| commitdiff \| tree
2019-04-22	Jim Procter	JAL-3224 JAL-3196 specify file object in projectFile...	commit \| commitdiff \| tree
2019-04-22	Jim Procter	JAL-3130 JAL-3224 patch URL paths to point to www.jalview...	commit \| commitdiff \| tree
2019-04-22	Jim Procter	JAL-3130 provide absolute module path as J11 compile...	commit \| commitdiff \| tree
2019-04-22	Jim Procter	Merge branch 'jims/JAL-3130_Java11_Gradle_publishing...	commit \| commitdiff \| tree
2019-04-17	Jim Procter	JAL-3111 fix 2.11 html anchor in docs	commit \| commitdiff \| tree
2019-04-17	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-04-17	Jim Procter	JAL-3111 Jalview 2.11 what’s New and estimated release...	commit \| commitdiff \| tree
2019-04-17	Jim Procter	JAL-3111 tweak PCA documentation	commit \| commitdiff \| tree
2019-04-17	Jim Procter	Merge branch 'develop' into documentation/JAL-3111_release_211	commit \| commitdiff \| tree
2019-04-16	Jim Procter	JAL-3130 tidy up system.output	commit \| commitdiff \| tree
2019-04-16	Jim Procter	JAL-3130 call Jalview via the Test JVM’s JAVA_HOME...	commit \| commitdiff \| tree
2019-04-16	Jim Procter	JAL-3130 refactored ‘clover’ to ‘use_clover’ since...	commit \| commitdiff \| tree
2019-04-16	Jim Procter	JAL-3130 JAL-1889 reportCurrentWorkingDirectory test...	commit \| commitdiff \| tree
2019-04-16	Jim Procter	JAL-3130 JAL-1889 report absolute paths for CommandLineTests	commit \| commitdiff \| tree
2019-04-16	Jim Procter	JAL-3130 JAL-1889 report absolute paths for CommandLineTests	commit \| commitdiff \| tree
2019-04-16	Jim Procter	JAL-3130 JAL-1889 report absolute paths for CommandLineTests	commit \| commitdiff \| tree
2019-04-16	Jim Procter	JAL-3196 change default are resource properties to...	commit \| commitdiff \| tree
2019-04-16	Jim Procter	Reinstate imports from "JAL-1889 JAL-3130 patch broken...	commit \| commitdiff \| tree
2019-04-16	Jim Procter	JAL-1189 JAL-3130 patch broken tests	commit \| commitdiff \| tree
2019-04-14	Jim Procter	JAL-3130 write clover.xml during cloverReport phase	commit \| commitdiff \| tree
2019-04-14	Jim Procter	JAL-3130 make sure testng-results.xml is generated	commit \| commitdiff \| tree
2019-04-12	Jim Procter	JAL-3130 specify module list when launching new Jalview...	commit \| commitdiff \| tree
2019-04-12	Jim Procter	JAL-3130 instrument main and compile separately to...	commit \| commitdiff \| tree
2019-04-12	Jim Procter	JAL-3130 gradle test now runs open clover 4.3.1 and...	commit \| commitdiff \| tree
2019-04-11	Jim Procter	Merge branch 'develop' into task/JAL-3130_Java_11_investigat...	commit \| commitdiff \| tree
2019-04-11	Jim Procter	JAL-3130 ensure J11 libs/modules are added when building...	commit \| commitdiff \| tree
2019-04-11	Jim Procter	JAL-3130 clean up eclipse class path for dependencies...	commit \| commitdiff \| tree
2019-03-29	Jim Procter	JAL-3111 Disable the pubapplet target in build.xml...	commit \| commitdiff \| tree
2019-03-28	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2019-03-28	Jim Procter	JAL-3111 biojava dependencies	commit \| commitdiff \| tree
2019-03-28	Jim Procter	JAL-3111 fix libquagua dependency paths - needs to...	commit \| commitdiff \| tree
2019-03-28	Jim Procter	JAL-3111 fix jabaws dependency name in IA config	commit \| commitdiff \| tree
2019-03-28	Jim Procter	JAL-3111 intervalstore library on IA classpath	commit \| commitdiff \| tree
2019-03-28	Jim Procter	JAL-3111 typo in IA config	commit \| commitdiff \| tree
2019-03-28	Jim Procter	JAL-3111 update InstallAnywhere dependencies for changed...	commit \| commitdiff \| tree
2019-03-07	Jim Procter	JAL-3127 set ‘updateStructures’ flag for viewports...	commit \| commitdiff \| tree
2019-03-04	Jim Procter	Merge branch 'develop' into documentation/JAL-3111_release_211	commit \| commitdiff \| tree
2019-03-04	Jim Procter	release notes for JAL-1767 JAL-2647 JAL-3198 JAL-3200...	commit \| commitdiff \| tree
2019-02-28	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2019-02-28	Jim Procter	Merge branch 'feature/JAL-3141_backupfiles_for211'...	commit \| commitdiff \| tree
2019-01-18	Jim Procter	Merge branch 'feature/JAL-3063jaxbNoCastor' into feature...	commit \| commitdiff \| tree
2019-01-18	Jim Procter	Merge branch 'develop' into feature/JAL-3063jaxbNoCastor	commit \| commitdiff \| tree
2019-01-17	Jim Procter	JAL-3116 clear out whitespace when materialising Sequence...	commit \| commitdiff \| tree
2019-01-16	Jim Procter	Merge branch 'feature/JAL-3063jaxbNoCastor' into develop	commit \| commitdiff \| tree
2019-01-16	Jim Procter	Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JAL...	commit \| commitdiff \| tree
2019-01-15	Jim Procter	JAL-1767 test that changing view association for PCA...	commit \| commitdiff \| tree
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