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2018-09-07	Jim Procter	JAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5...	commit \| commitdiff \| tree
2018-09-07	Jim Procter	JAL-2988 if selected file is null (On Java 10/OSX ...	commit \| commitdiff \| tree
2018-09-07	Jim Procter	JAL-2988 workaround: overload getSelectedFile() because...	commit \| commitdiff \| tree
2018-09-07	Jim Procter	JAL-3106 use .jvp as default	commit \| commitdiff \| tree
2018-09-07	Jim Procter	JAL-3105 fix for focus transfer after window closed...	commit \| commitdiff \| tree
2018-09-06	Jim Procter	JAL-3091 code committed in error (failed patch for...	commit \| commitdiff \| tree
2018-09-06	Jim Procter	JAL-3091 release notes for JAL-3104	commit \| commitdiff \| tree
2018-09-06	Jim Procter	JAL-3105 reallocate quality and consensus annotation...	commit \| commitdiff \| tree
2018-09-06	Jim Procter	JAL-2854 compute visible annotation panel height and...	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3065 don’t quote class path args for Runtime.exec...	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3091 update whats new!	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3091 update Java 10 known issues/workarounds in...	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3091 known defect in whats new for Java 10 issues...	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3091 add Ben Soares to authors list and switch...	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3091 release notes for updated memory settings	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3091 release notes	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3101 increase default heap size in IA and JNLP...	commit \| commitdiff \| tree
2018-09-05	Jim Procter	Merge branch 'patch/VAqua_saveload_update_JAL-2988...	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-2988 update InstallAnywhere install dependencies...	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3091 release date set for Thursday 6th September	commit \| commitdiff \| tree
2018-09-05	Jim Procter	Merge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroovysett...	commit \| commitdiff \| tree
2018-09-05	Jim Procter	JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7f6417...	commit \| commitdiff \| tree
2018-09-04	Jim Procter	JAL-3091 JAL-2988 release notes re Java 10 and OSX	commit \| commitdiff \| tree
2018-09-03	Jim Procter	Merge branch 'patch/VAqua_saveload_update_JAL-2988...	commit \| commitdiff \| tree
2018-09-03	Jim Procter	Merge branch 'releases/Release_2_10_5_Branch' of http...	commit \| commitdiff \| tree
2018-09-03	Jim Procter	JAL-3091 -Dnosign to disable jar signing phase of build	commit \| commitdiff \| tree
2018-09-03	Jim Procter	JAL-3091 -Dnosign to disable jar signing phase of build	commit \| commitdiff \| tree
2018-09-03	Jim Procter	JAL-3091 release notes and whats new !	commit \| commitdiff \| tree
2018-09-03	Jim Procter	JAL-3065 release notes	commit \| commitdiff \| tree
2018-09-03	Jim Procter	Merge branch 'bug/JAL-3065_DH_keyPair_Exception' into...	commit \| commitdiff \| tree
2018-09-03	Jim Procter	JAL-3087 release notes	commit \| commitdiff \| tree
2018-08-31	Jim Procter	JAL-3095 account for sequence start when highlighting...	commit \| commitdiff \| tree
2018-08-31	Jim Procter	JAL-3053 JAL-3061 JAL-3095 release notes	commit \| commitdiff \| tree
2018-08-31	Jim Procter	Merge branch 'bug/JAL-3061_RNA_secondary_structure_annotatio...	commit \| commitdiff \| tree
2018-08-31	Jim Procter	Merge branch 'releases/Release_2_10_5_Branch' of http...	commit \| commitdiff \| tree
2018-08-31	Jim Procter	JAL-3095 release notes	commit \| commitdiff \| tree
2018-08-31	Jim Procter	java doc and fix for JAL-3095 - region of trimmed RNA...	commit \| commitdiff \| tree
2018-08-30	Jim Procter	JAL-3092 release notes	commit \| commitdiff \| tree
2018-08-30	Jim Procter	JAL-3092 make sure base pair counter is always moved...	commit \| commitdiff \| tree
2018-08-29	Jim Procter	JAL-3091 release notes for JAL-3003 JAL-3059	commit \| commitdiff \| tree
2018-08-28	Jim Procter	JAL-3003 different coloured borders in demo annotation...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3059 use correct border colour for groups	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3003 draw selection group outline on main graphics...	commit \| commitdiff \| tree
2018-08-28	Jim Procter	JAL-247 release notes	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 comment to clarify wrapped print algorithm	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 print/export wrapped uses common code to draw...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3087 include full alignment height in repeating...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 draw/print sequence ids now uses common code...	commit \| commitdiff \| tree
2018-08-28	Jim Procter	JAL-3091 release 2.10.5 added to release notes	commit \| commitdiff \| tree
2018-08-22	Jim Procter	JAL-2988 workaround for jalview save as dialogs - clear...	commit \| commitdiff \| tree
2018-08-22	Jim Procter	JAL-2988 JAL-2976 update to latest VAqua release: VAqua5	commit \| commitdiff \| tree
2018-08-01	Jim Procter	Merge branch 'releases/Release_2_10_4_Branch' into...	commit \| commitdiff \| tree
2018-08-01	Jim Procter	Merge branch 'task/JAL-3047_clover2104b1_cherrypick...	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 don't set classes unconditionally (forgot...	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 don’t let the makedist task complete if a...	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 ‘cloverclasses’ build directory for instrumented...	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 enable clover for testng	commit \| commitdiff \| tree
2018-08-01	Jim Procter	JAL-3047 ignore clover output dir	commit \| commitdiff \| tree
2018-06-07	Jim Procter	JAL-3009 release notes	commit \| commitdiff \| tree
2018-06-07	Jim Procter	Merge branch 'bugs/JAL-3009_blockingNetworkThreads...	commit \| commitdiff \| tree
2018-06-07	Jim Procter	JAL-2999 what's new and tweak release notes order	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2999 refine release notes	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2999 release 2.10.4b1 on Thursday (promise!)	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2920 release notes	commit \| commitdiff \| tree
2018-06-06	Jim Procter	Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2920 revised TODO for JAL-3025	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2920 don’t output variant/original sequence as...	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-2920 JAL-3017 uniprot XML schema included in mappings doc	commit \| commitdiff \| tree
2018-06-06	Jim Procter	JAL-1920 JAL-3017 use newline not <br/> in description...	commit \| commitdiff \| tree
2018-06-05	Jim Procter	JAL-3009 news reader thread should be in background...	commit \| commitdiff \| tree
2018-06-05	Jim Procter	JAL-3009 Identifiers.Org retrieval on background thread.	commit \| commitdiff \| tree
2018-06-04	Jim Procter	JAL-3017 parse multiple variant elements for uniprot...	commit \| commitdiff \| tree
2018-06-04	Jim Procter	JAL-2999 update release notes and patch date to 5th...	commit \| commitdiff \| tree
2018-06-02	Jim Procter	JAL-3017 parse multiple variant elements for uniprot...	commit \| commitdiff \| tree
2018-05-30	Jim Procter	JAL-2999 2.10.4b1 release 31st May	commit \| commitdiff \| tree
2018-05-26	Jim Procter	JAL-2999 release date for 2.10.4b1 set for 27th May...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'documentation/JAL-2999_r2104b1' into...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'bug/JAL-2992panelHeight' into releases...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'bug/JAL-1460_dragndropWindows' into releases...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	Merge branch 'feature/JAL-2994chimeraPath' into releases...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-1460 clarify release notes - and mention that shortcuts...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-2994 add a few future release points for good measure...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-1460 temp variable for clearer conditional and...	commit \| commitdiff \| tree
2018-05-25	Jim Procter	JAL-1460 javadoc	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-2999 issues resolved (or nearly so) for 2.10.4b1	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 process .lnk files dragged to Jalview when...	commit \| commitdiff \| tree
2018-05-24	Jim Procter	JAL-1460 new data flavor for URLs added belt-and-braces...	commit \| commitdiff \| tree
2018-05-23	Jim Procter	fix for JAL-2991 - we could do better :/	commit \| commitdiff \| tree
2018-05-23	Jim Procter	JAL-2999 release notes and version bump for jalview...	commit \| commitdiff \| tree
2018-05-23	Jim Procter	JAL-2895 replace $$Jalview-Version$$ in help.jhm with...	commit \| commitdiff \| tree
2018-05-10	Jim Procter	JAL-2920 release notes	commit \| commitdiff \| tree
2018-05-10	Jim Procter	Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...	commit \| commitdiff \| tree
2018-05-10	Jim Procter	JAL-2920 basic test for Description from features with...	commit \| commitdiff \| tree
2018-05-10	Jim Procter	JAL-2920 simplified logic and added corner cases for...	commit \| commitdiff \| tree
2018-05-09	Jim Procter	JAL-2906 update release date and release notes	commit \| commitdiff \| tree
2018-05-09	Jim Procter	JAL-2931 patch IA paths for new build box	commit \| commitdiff \| tree
2018-05-09	Jim Procter	Merge branch 'patch/JAL-2976_vaqua4_fallback' into...	commit \| commitdiff \| tree
2018-05-09	Jim Procter	JAL-2976 fixed bad equivalence check and implemented...	commit \| commitdiff \| tree
2018-05-08	Jim Procter	JAL-2321 release notes	commit \| commitdiff \| tree
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