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2017-05-31	tcofoegbu	JAL-2375 fix unit test to reflect improvement	commit \| commitdiff \| tree
2017-05-31	tcofoegbu	Fixed failing tests	commit \| commitdiff \| tree
2017-05-31	tcofoegbu	JAL-2533 updated unit test to reflect improvement	commit \| commitdiff \| tree
2017-05-26	tcofoegbu	JAL-2465 Improvement to re-instate storing recently...	commit \| commitdiff \| tree
2017-05-26	tcofoegbu	JAL-2465 fix to prevent files loaded from the system...	commit \| commitdiff \| tree
2017-05-15	tcofoegbu	JAL-2520 improvement to use URL leaf name for creating...	commit \| commitdiff \| tree
2017-05-15	tcofoegbu	JAL-2533 improvement to prune off file extension when...	commit \| commitdiff \| tree
2017-05-09	tcofoegbu	JAL-2520 improvement to download and update structure...	commit \| commitdiff \| tree
2017-05-09	tcofoegbu	JAL-2520 unit test for improvement to download structure...	commit \| commitdiff \| tree
2017-05-09	tcofoegbu	JAL-2465 fix to dynamically specify data source type...	commit \| commitdiff \| tree
2017-05-08	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-05-04	tcofoegbu	Merge branch 'features/JAL-2473_set-minimium-dimensions...	commit \| commitdiff \| tree
2017-05-04	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-05-01	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-05-01	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-05-01	tcofoegbu	JAL-2482 bug fix	commit \| commitdiff \| tree
2017-05-01	tcofoegbu	JAL-2482 unit test for bug fix	commit \| commitdiff \| tree
2017-05-01	tcofoegbu	JAL-2465 missed commit for refactore renaming of getPdbFile...	commit \| commitdiff \| tree
2017-05-01	tcofoegbu	JAL-2465 bugfix and rerefactor renamed getPdbFile(...	commit \| commitdiff \| tree
2017-05-01	tcofoegbu	JAL-2465 unit test for bugfix	commit \| commitdiff \| tree
2017-05-01	tcofoegbu	JAL-2376 copied out patch from Phyre branch	commit \| commitdiff \| tree
2017-04-25	tcofoegbu	JAL-2489 edited unit test code comment	commit \| commitdiff \| tree
2017-04-25	tcofoegbu	JAL-2489 Unit test for bug	commit \| commitdiff \| tree
2017-04-25	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-04-25	tcofoegbu	JAL-2489 bug fix	commit \| commitdiff \| tree
2017-04-21	tcofoegbu	JAL-2485 Bug fix to filter out uniprot response header...	commit \| commitdiff \| tree
2017-04-19	tcofoegbu	JAL-2482 added null check	commit \| commitdiff \| tree
2017-04-18	tcofoegbu	JAL-2482 Bugfix	commit \| commitdiff \| tree
2017-04-11	tcofoegbu	Pull from develop	commit \| commitdiff \| tree
2017-04-11	tcofoegbu	JAL-2473 removed unused fields in JalviewDialog	commit \| commitdiff \| tree
2017-04-10	tcofoegbu	Merge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux...	commit \| commitdiff \| tree
2017-04-10	tcofoegbu	JAL-2255 Bug fix	commit \| commitdiff \| tree
2017-04-10	tcofoegbu	Merge branch 'develop' into bug/JAL-2255_seq-fetcher...	commit \| commitdiff \| tree
2017-04-10	tcofoegbu	JAL-2473 added improvement to apply default / custom...	commit \| commitdiff \| tree
2016-11-28	tcofoegbu	Merge branch 'features/JAL-2326_JOptionPane-refactoring...	commit \| commitdiff \| tree
2016-11-24	tcofoegbu	JAL-2326 added setup method for JvOptionPane in all...	commit \| commitdiff \| tree
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	commit \| commitdiff \| tree
2016-11-24	tcofoegbu	JAL-2326 added layer of abstraction between Jalview...	commit \| commitdiff \| tree
2016-11-22	tcofoegbu	Merge branch 'bug/JAL-2277_refactorPrintUnwrapped'...	commit \| commitdiff \| tree
2016-11-22	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-22	tcofoegbu	JAL-2322 added runnable interface to HTMLOutput class...	commit \| commitdiff \| tree
2016-11-21	tcofoegbu	JAL-2277 bug fix for mis-alligned graphics output for...	commit \| commitdiff \| tree
2016-11-21	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-21	tcofoegbu	JAL-2332 bugfix to enable structure chooser opening...	commit \| commitdiff \| tree
2016-11-16	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-16	tcofoegbu	JAL-2322 JAL-2309 replaced references to isheadless...	commit \| commitdiff \| tree
2016-11-14	tcofoegbu	JAL-2322 Refactored unified architecture for data ...	commit \| commitdiff \| tree
2016-11-11	tcofoegbu	JAL-2277 Refactored out duplicated method - printUnwrapped...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	Merge branch 'bug/JAL-2317_jmol_chimera-chain-factorisation...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	Merge branch 'develop' into bug/JAL-2317_jmol_chimera...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	JAL-2317 Fixed Chimera command for hiding/showing distinct...	commit \| commitdiff \| tree
2016-11-10	tcofoegbu	Bugfix to enable accurate chain extraction/association...	commit \| commitdiff \| tree
2016-11-08	tcofoegbu	JAL-2280 Updated spanish translation as recommended...	commit \| commitdiff \| tree
2016-11-08	tcofoegbu	JAL-2292 updated method calls	commit \| commitdiff \| tree
2016-11-08	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-08	tcofoegbu	JAL-2292 renamed method and improved implementation...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 squashed bug that breaks feature mapping for...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 added javadoc for compareChar(..) utility...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2195 JAL-2262 house keeping	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 fix for wrong mapping output in sequence mapping...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 Wrote utility method for comparing two char...	commit \| commitdiff \| tree
2016-11-04	tcofoegbu	JAL-2292 Unit test for utility method for comparing...	commit \| commitdiff \| tree
2016-11-03	tcofoegbu	JAL-2312 unit test for bug fix - repeated mapping generated...	commit \| commitdiff \| tree
2016-11-03	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-11-03	tcofoegbu	JAL-2312 Bug fix for repeated mapping generation from...	commit \| commitdiff \| tree
2016-11-01	tcofoegbu	JAL-2280 refactored and improved structure file identificati...	commit \| commitdiff \| tree
2016-10-27	tcofoegbu	JAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...	commit \| commitdiff \| tree
2016-10-27	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-10-27	tcofoegbu	JAL-2280 Improvement to enable drag'n'drop association...	commit \| commitdiff \| tree
2016-10-26	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-10-26	tcofoegbu	Merge branch 'features/JAL-2284_export-biojsmsa-via...	commit \| commitdiff \| tree
2016-10-26	tcofoegbu	JAL-2284 basic support for exporting BioJS MSA viewer...	commit \| commitdiff \| tree
2016-10-25	tcofoegbu	Merge branch 'bug/JAL-2277_html-output-wrapped-mode...	commit \| commitdiff \| tree
2016-10-25	tcofoegbu	JAL-2277 Improvement to support html+svg export in...	commit \| commitdiff \| tree
2016-10-17	tcofoegbu	JAL-2262 JAL-2195 Improvement to set PDBId availability...	commit \| commitdiff \| tree
2016-10-12	tcofoegbu	JAL-2255 another possible fix	commit \| commitdiff \| tree
2016-10-12	tcofoegbu	JAL-2255 possible bug fix	commit \| commitdiff \| tree
2016-10-11	tcofoegbu	Merge branch 'features/JAL-2039_Offer_cached_structurefiles_...	commit \| commitdiff \| tree
2016-10-11	tcofoegbu	JAL-2039 improvement to offer cached structure view...	commit \| commitdiff \| tree
2016-10-10	tcofoegbu	Merge branch 'bug/JAL-2262_dnd-for-local-structure...	commit \| commitdiff \| tree
2016-10-10	tcofoegbu	JAL-2262 JAL-2195 unit test for bug	commit \| commitdiff \| tree
2016-10-10	tcofoegbu	JAL-2262 JAL-2195 bug fix for mapping local structure...	commit \| commitdiff \| tree
2016-10-05	tcofoegbu	QQMerge branch 'develop' of https://source.jalview...	commit \| commitdiff \| tree
2016-10-05	tcofoegbu	JAL-1563 JAL-1479 minor house-keeping for Uniprot FTS...	commit \| commitdiff \| tree
2016-09-23	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-09-23	tcofoegbu	JAL-2164 JAL-1919 fixed failed revert commit	commit \| commitdiff \| tree
2016-09-19	tcofoegbu	merge	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	JAL-2164 JAL-1919 disabled PDB file parser configuration...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	Revert "JAL-2164 JAL-1919 disabled and removed PDB...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	JAL-2164 JAL-1919 disabled and removed PDB file parser...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-09-13	tcofoegbu	JAL-2195 bug fix to enable restoring jmol session save...	commit \| commitdiff \| tree
2016-09-09	tcofoegbu	merge	commit \| commitdiff \| tree
2016-09-08	tcofoegbu	JAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property...	commit \| commitdiff \| tree
2016-08-31	tcofoegbu	JAL-2148 further enhancment to CA HETATM processing	commit \| commitdiff \| tree
2016-08-19	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2016-08-19	tcofoegbu	JAL-1803 unit test for PDB chainCode save/restore from...	commit \| commitdiff \| tree
2016-08-15	tcofoegbu	JAL-1128 fix for truncated bottom boarder pixels in...	commit \| commitdiff \| tree
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