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Merge branch 'jims_marckhacks' into develop
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop
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2014-04-21 Jim ProcterJAL-1473 define defaults for DNA/Protein PCA calculation
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2014-04-21 Jim ProcterJAL-1485 JAL-1483 show i18n key for different available...
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2014-04-21 Jim ProcterJAL-1473 JAL-1355 i18n for score model submenu
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2014-04-21 Jim ProcterJAL-1485 JAL-1473 use compound i18n messages to construct...
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2014-04-21 Jim ProcterJAL-1485
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2014-04-21 Jim ProcterJAL-1484 always update the dataset sequence if 'trimDatasetS...
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2014-04-21 Jim ProcterJAL-1466 don't include empty columns if no upstream...
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2014-04-21 Jim ProcterJAL-1355 JAL-1466 i18n for flanking sequence menu entry...
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2014-04-21 Jim ProcterJAL-741 (poss related JAL-971) - fix NPE raised when...
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2014-04-21 Jim ProcterJAL-1476 JAL-1016 avoid NPE messiness if structures...
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2014-04-21 Jim Procterdon't unhook existing group associated annotation JAL...
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2014-04-21 Jim Procterfix for JAL-1478
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2014-04-21 Jim ProcterJAL-1478 test to demonstrate bug
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2014-04-21 Jim ProcterJAL-1477 tooltip
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2014-04-21 Jim ProcterJAL-1476 - don't send broken commands to Jmol when...
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2014-04-21 Jim ProcterJAL-1477 first implementation of 'View all representative...
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2014-04-21 Jim ProcterJAL-1466 import full length sequence to dataset sequence...
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2014-04-21 Jim ProcterJAL-1466 flag and jalview_properties setting to control...
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2014-04-21 Jim ProcterJAL-1466 improved test and patched off by one that...
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2014-04-21 Jim ProcterJAL-1466 new calculation menu option to recover the...
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2014-04-21 Jim Proctertidy imports
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2014-04-21 Jim Procterpatch v2 for JAL-1474 add the newly recovered dataset...
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2014-04-21 Jim Procterpatch v1 for JAL-1474 - make sure we actually set the...
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2014-04-21 Jim ProcterJAL-1474 note about buggy 'merge sequence' operation...
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2014-04-21 Jim ProcterJAL-1473 tree calcs performed with ScoreModelI instances
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2014-04-21 Jim Procterdon't finness the alignment annotation modification...
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2014-04-21 Jim Procterpatch for JAL-1465 - set min/max thresholds for each...
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2014-04-21 Jim ProcterJAL-1473 menu entries for different score models available...
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2014-04-21 Jim ProcterJAL-1473 provide Amino acid physicochemical conservation...
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2014-04-21 Jim ProcterJAL-1473 show available score matrices for use in PCA...
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2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calculations...
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2014-04-21 Jim ProcterJAL-1355 missing message
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2014-04-06 Jim Procterfix for JAL-1464 avoid NPE with per-sequence annotation...
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2014-04-05 Jim ProcterMerge branch 'r281_JAL-1211' into develop
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2014-04-05 Jim ProcterMerge branch 'r281_JAL-1211' into Release_2_8_1_Branch
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2014-04-04 Jim ProcterJAL-1211 - set annotation panel height according to...
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2014-04-04 Jim ProcterJAL-1211 - pick up site-defined defined window geometry...
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2014-04-04 Jim Procterfix for JAL-1461 - check that filetype setting in browser...
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2014-04-04 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2_8_1_...
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2014-04-04 Jim ProcterJAL-1335 typo and 'edit' action
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2014-02-26 Jim ProcterMerge branch 'JAL-1226' into develop
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2014-02-26 Jim ProcterMerge branch 'JAL-1226' into Release_2_8_1_Branch_i18n
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2014-02-26 Jim ProcterMerge branch 'JAL-1226' into Release_2_8_1_Branch
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2014-02-26 Jim Procterfix for JAL-1226
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2014-02-26 Jim ProcterMerge branch 'JAL-686' into Release_2_8_1_Branch_i18n
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2014-02-26 Jim ProcterMerge branch 'JAL-686' into develop
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2014-02-26 Jim ProcterMerge branch 'JAL-686' into Release_2_8_1_Branch
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2014-02-26 Jim ProcterJAL-1457 refactoring to explore why '-' appear in annotation...
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2014-02-26 Jim Procterfix for JAL-686 - don't trim spaces before creating...
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2014-02-25 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into develop
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2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into Release_2_8_1_Branch
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2014-02-25 Jim ProcterJAL-1355 typo in key
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2014-02-25 Jim ProcterMerge branch 'JAL-1454_patch' into Release_2_8_1_Branch
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2014-02-25 Jim ProcterJAL-1454 catch exceptions during calculation and report...
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2014-02-25 Jim ProcterJAL-1454 increase max for tqli iterations and throw...
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2014-02-21 Jim ProcterMerge branch 'JAL-1364_patch' into develop
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2014-02-21 Jim ProcterMerge branch 'JAL-1364_patch' into Release_2_8_1_Branch
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2014-02-21 Jim Procterpatch for JAL-1449 - continuance of JAL-1364 - check...
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2014-02-21 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2014-02-21 Jim ProcterMerge branch 'pathc_JAL-1354' into develop
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2014-02-21 Jim ProcterMerge branch 'pathc_JAL-1354' into Release_2_8_1_Branch
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2014-02-21 Jim ProcterJAL-1448 reinstate non-locale sensitive code for reading...
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2014-02-21 Jim ProcterJAL-1354 typo
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2014-02-21 Jim ProcterJAL-1354 use real var-args method signature to avoid...
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2014-02-21 Jim ProcterJAL-1354 quoted format strings are not substituted
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2014-02-20 Jim ProcterMerge branch 'JAL-1447' into develop
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2014-02-20 Jim ProcterMerge branch 'JAL-1447' into Release_2_8_1_Branch
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2014-02-20 Jim ProcterJAL-1447 patch to correctly recognise FASTA files containing '*'
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2014-02-20 Jim Proctertest and data for JAL-1447
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2014-02-20 Jim ProcterJAL-1447 - more flexible testing for file format Identity...
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2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
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2014-02-18 Jim ProcterMerge branch 'JAL-1445' into Release_2_8_1_Branch
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2014-02-18 Jim Procterclear out 2.8.0b1 what's new and add JAL-1445 to list...
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2014-02-18 Jim ProcterJAL-1445 basic help docs for feature
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2014-02-18 Jim ProcterJAL-1445 JAL-1354 english strings for select by feature
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2014-02-18 Jim ProcterJAL-1445 (shift+) double click on feature type in desktop...
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2014-02-18 Jim ProcterJAL-1446 use popup event trigger instead of right-click...
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2014-02-17 Jim ProcterJAL-1445 added menu items to select containing/non...
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2014-02-17 Jim ProcterJAL-1445 ported routine for selecting containing/non...
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2014-02-17 Jim ProcterJAL-1445 expose columnSelection setter.
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2014-02-17 Jim ProcterJAL-535 interface for GUI state update methods that...
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2014-02-17 Jim ProcterJAL-1445 groovy script demonstrating how to select...
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2014-02-03 Jim ProcterMerge branch 'try_r20b1_merge' into Release_2_8_1_Branch
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2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1_merge
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2014-02-03 Jim ProcterJAL-1358 JWS-69 add Daniel to the list of Jalview Authors
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2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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2014-02-03 Jim ProcterMerge branch 'JAL-957_jbake' into r281_JAL-957
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2014-01-30 Jim ProcterJAL-1432 'whats new' and release history
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2014-01-29 Jim ProcterJAL-957 reinstate jnetfile parameter
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2014-01-29 Jim ProcterJAL-1432 patch broken comments in css
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2014-01-29 Jim ProcterJAL-1432 natasha's name on applet author list
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2014-01-29 Jim ProcterJAL-1432 updated copyright notices
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2014-01-29 Jim ProcterJAL-1432 AUTHORS file and updated authors properties...
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2014-01-29 Jim ProcterJAL-1432 update dependency and licensing info
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2014-01-29 Jim ProcterJAL-1432 bump version
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2014-01-29 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-29 Jim ProcterJAL-1400 added explanation about signed/unsigned applet...
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2014-01-29 Jim ProcterJAL-970 JAL-1400 fixed layout
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