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2019-03-11	gmungoc	Merge branch 'develop' into merge/JAL-3127	commit \| commitdiff \| tree
2019-03-11	gmungoc	Merge branch 'feature/JAL-2250colourAllGroups' into...	commit \| commitdiff \| tree
2019-03-11	gmungoc	JAL-3201 restore group colours correctly from project	commit \| commitdiff \| tree
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	commit \| commitdiff \| tree
2019-03-11	gmungoc	JAL-3206 strict above/below threshold test restored	commit \| commitdiff \| tree
2019-03-11	gmungoc	Merge branch 'bug/JAL-3075' into develop	commit \| commitdiff \| tree
2019-03-08	gmungoc	JAL-3193 defensive trim of URL read from properties...	commit \| commitdiff \| tree
2019-03-08	gmungoc	JAL-2903 typos fixed	commit \| commitdiff \| tree
2019-03-08	gmungoc	JAL-3075 update column selection on mouse up after...	commit \| commitdiff \| tree
2019-03-07	gmungoc	Merge branch 'feature/JAL-3180colourAnnotationMenu...	commit \| commitdiff \| tree
2019-03-07	gmungoc	JAL-2250 default Apply Colour to All Groups selected	commit \| commitdiff \| tree
2019-03-07	gmungoc	JAL-2717 JAL-2360 belated unit tests for ColourMenuHelper	commit \| commitdiff \| tree
2019-03-07	gmungoc	JAL-2717 corrected i18n of colour scheme names	commit \| commitdiff \| tree
2019-03-07	gmungoc	Merge branch 'feature/JAL-3205symmetricCalc' into develop	commit \| commitdiff \| tree
2019-03-07	gmungoc	JAL-3035 removed spring libraries as only used for...	commit \| commitdiff \| tree
2019-03-06	gmungoc	Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...	commit \| commitdiff \| tree
2019-03-06	gmungoc	JAL-3035 restored erroneous deletion	commit \| commitdiff \| tree
2019-03-06	gmungoc	Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...	commit \| commitdiff \| tree
2019-03-06	gmungoc	JAL-3035 more das bits removed	commit \| commitdiff \| tree
2019-03-05	gmungoc	Merge branch 'bug/JAL-3201groupClustal' into develop	commit \| commitdiff \| tree
2019-03-05	gmungoc	Merge remote-tracking branch 'origin/features/JAL-2620altern...	commit \| commitdiff \| tree
2019-03-05	gmungoc	Merge branch 'bug/JAL-2621' into develop	commit \| commitdiff \| tree
2019-03-05	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-3141_Messages_d...	commit \| commitdiff \| tree
2019-03-05	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-2839findWithHid...	commit \| commitdiff \| tree
2019-03-05	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-914multipleHelp...	commit \| commitdiff \| tree
2019-03-05	gmungoc	Merge remote-tracking branch 'origin/features/JAL-2814ftsHel...	commit \| commitdiff \| tree
2019-03-05	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-3002fastPaintWr...	commit \| commitdiff \| tree
2019-03-05	gmungoc	JAL-3049 JAL-3032 tidy/i18n code, remove redundant...	commit \| commitdiff \| tree
2019-03-05	gmungoc	JAL-3049 redo (part of) commit 92bc328	commit \| commitdiff \| tree
2019-03-05	gmungoc	JAL-3054 small y-overlap of tooltip and cell leads...	commit \| commitdiff \| tree
2019-03-05	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-3049colourCellT...	commit \| commitdiff \| tree
2019-03-05	gmungoc	JAL-3205 added a delta parameter to Matrix.equals()	commit \| commitdiff \| tree
2019-03-04	gmungoc	Merge branch 'bug/JAL-3072scrollThread' into merge...	commit \| commitdiff \| tree
2019-03-04	gmungoc	Merge remote-tracking branch 'origin/bug/JAL-3082selectRegex...	commit \| commitdiff \| tree
2019-03-04	gmungoc	JAL-3206 avoid divide by zero when threshold is graphMin...	commit \| commitdiff \| tree
2019-03-04	gmungoc	Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...	commit \| commitdiff \| tree
2019-03-04	gmungoc	Merge remote-tracking branch 'origin/tasks/JAL-3035_remove_d...	commit \| commitdiff \| tree
2019-03-04	gmungoc	Merge branch 'bug/JAL-3120restoreFeatureColour' into...	commit \| commitdiff \| tree
2019-03-04	gmungoc	JAL-3205 worked examples in unit test for symmetric...	commit \| commitdiff \| tree
2019-03-03	gmungoc	JAL-3205 one more unit test case	commit \| commitdiff \| tree
2019-03-03	gmungoc	JAL-3205 faster calculation with symmetric score matrix	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'bug/JAL-2791exportFilteredFeature' into...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'feature/JAL-3093wrappedModeTooltips'...	commit \| commitdiff \| tree
2019-03-01	gmungoc	JAL-3093 unit test adapts to actual number of annotation...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'feature/JAL-3093wrappedModeTooltips'...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'feature/JAL-1244stretchStatusMsg' into...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'bug/JAL-3139colocatedFeatures' into develop	commit \| commitdiff \| tree
2019-03-01	gmungoc	JAL-3154 disable reorder columns before adding to viewport	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'bug/JAL-3154tableColumnDrag' into develop	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'bug/JAL-3161annotationTooltipRange' into...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'bug/JAL-3158selectionBroadcasts' into...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'bug/JAL-3164complementOverview' into...	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'merge/JAL-3140' into develop	commit \| commitdiff \| tree
2019-03-01	gmungoc	JAL-3140 update for change to SequenceI api	commit \| commitdiff \| tree
2019-03-01	gmungoc	Merge branch 'feature/intervalStoreJ' into merge/JAL...	commit \| commitdiff \| tree
2019-03-01	gmungoc	JAL-3140 reduced coupling to intervalstore.jar	commit \| commitdiff \| tree
2019-02-28	gmungoc	JAL-3140 confine intervalstore imports to jalview.datamodel...	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge branch 'bug/JAL-2420revealAllMenu' into develop	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge branch 'bug/JAL-3166npeAllRowsHidden' into develop	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge branch 'feature/JAL-3169cancelOverwrite' into...	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge branch 'feature/JAL-3143ensemblJSON' into merge...	commit \| commitdiff \| tree
2019-02-28	gmungoc	Merge remote-tracking branch 'origin/feature/JAL-3141_backup...	commit \| commitdiff \| tree
2019-02-27	gmungoc	JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG	commit \| commitdiff \| tree
2019-02-26	gmungoc	JAL-3201 JAL-2386 don't pre-select 'apply to all groups'	commit \| commitdiff \| tree
2019-02-26	gmungoc	JAL-3201 group colour schemes distinct instances	commit \| commitdiff \| tree
2019-02-25	gmungoc	JAL-3200 fast lookup of DSSP3 notation	commit \| commitdiff \| tree
2019-02-24	gmungoc	JAL-3198 don't recalculate group conservation for Id...	commit \| commitdiff \| tree
2019-02-24	gmungoc	JAL-3198 SequenceGroup 'bulk constructor' without duplicates...	commit \| commitdiff \| tree
2019-02-22	gmungoc	JAL-2915 don't recalculate Overview on scroll to position...	commit \| commitdiff \| tree
2019-02-22	gmungoc	JAL-2738 don't set AF as feature score	commit \| commitdiff \| tree
2019-02-07	gmungoc	JAL-3140 updated to latest intervalstore.jar	commit \| commitdiff \| tree
2019-02-04	gmungoc	JAL-3143 update unit test for ID -> id change	commit \| commitdiff \| tree
2019-01-29	gmungoc	JAL-3143 format alleles array for feature description	commit \| commitdiff \| tree
2019-01-24	gmungoc	JAL-3018 Ensembl version updated to 9.0	commit \| commitdiff \| tree
2019-01-23	gmungoc	JAL-3063 correct handling of absent choice element...	commit \| commitdiff \| tree
2019-01-18	gmungoc	JAL-3143 'id' not 'ID' attribute drives generation...	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3186 remove Variable Colour from popup menu	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3186 remove duplicate message keys	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-2069 wider dialog so all fields show!	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-2069 clear any error colour when setting threshold...	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3125 tidy up	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3125 avoid slider 'rounding' threshold field value	commit \| commitdiff \| tree
2019-01-08	gmungoc	JAL-3180 Disabled 'By Annotation' group colour menu...	commit \| commitdiff \| tree
2019-01-04	gmungoc	JAL-3180 fix By Annotation selection state in colour...	commit \| commitdiff \| tree
2019-01-03	gmungoc	JAL-1889 additional test for clover-added fields	commit \| commitdiff \| tree
2019-01-03	gmungoc	JAL-1889 ignore 'synthetic' fields added for jacoco	commit \| commitdiff \| tree
2018-12-21	gmungoc	JAL-1767 minimise local variable scope	commit \| commitdiff \| tree
2018-12-19	gmungoc	JAL-2621 Overview uses hand cursor in drag box, crosshair...	commit \| commitdiff \| tree
2018-12-19	gmungoc	JAL-3178 include non-positional features in their group...	commit \| commitdiff \| tree
2018-12-19	gmungoc	JAL-2791 JAL-2808 correct Javadoc for api method	commit \| commitdiff \| tree
2018-12-19	gmungoc	JAL-3032 ignore /site also on non-JS branches	commit \| commitdiff \| tree
2018-12-10	gmungoc	JAL-1421 added type to List and Vector	commit \| commitdiff \| tree
2018-12-10	gmungoc	JAL-3169 leave file browser open on Cancel in overwrite...	commit \| commitdiff \| tree
2018-12-06	gmungoc	JAL-1854 fix Checkstyle import violations	commit \| commitdiff \| tree
2018-12-06	gmungoc	JAL-1854 Checkstyle updated to 8.12	commit \| commitdiff \| tree
2018-12-03	gmungoc	JAL-3063 Castor removed from codebase	commit \| commitdiff \| tree
2018-12-03	gmungoc	Merge branch 'feature/JAL-3063JAXB' into feature/JAL...	commit \| commitdiff \| tree
2018-11-30	gmungoc	JAL-2420 don't offer Reveal All over alignment panel	commit \| commitdiff \| tree
2018-11-30	gmungoc	JAL-3166 catch NPE if all sequences are hidden	commit \| commitdiff \| tree
2018-11-29	gmungoc	JAL-3140 updated IntervalStore jar	commit \| commitdiff \| tree
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