| 2021-02-04 |
gmungoc | JAL-3806 fix and test for one-to-many sequence mapping...
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commit | commitdiff | tree |
| 2021-01-28 |
gmungoc | JAL-3806 more lax allowance (3 positions) for stop...
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commit | commitdiff | tree |
| 2020-10-29 |
gmungoc | JAL-3700 mapped sequence group includes short (or all...
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commit | commitdiff | tree |
| 2020-10-28 |
gmungoc | JAL-3725 restrict mapped virtual feature location to...
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commit | commitdiff | tree |
| 2020-10-28 |
gmungoc | JAL-3725 helper methods for computing mapped feature...
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commit | commitdiff | tree |
| 2020-10-28 |
gmungoc | JAL-3725 exclude stop codon from CDS-to-protein mapping
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commit | commitdiff | tree |
| 2020-10-22 |
gmungoc | JAL-3763 Javadoc, check for null, additional tests
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commit | commitdiff | tree |
| 2020-10-22 |
gmungoc | JAL-3751 only merge strictly contiguous ranges of mappings
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commit | commitdiff | tree |
| 2020-10-22 |
gmungoc | JAL-3763 test coverage for AlignedCodonFrame.markMappedRegion
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commit | commitdiff | tree |
| 2020-10-22 |
gmungoc | JAL-3700 JAL-3763 create datasets for test sequences
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commit | commitdiff | tree |
| 2020-10-22 |
gmungoc | JAL-3763 failsafe check for null
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commit | commitdiff | tree |
| 2020-10-22 |
gmungoc | JAL-3763 refactored getCoveringMapping for virtual...
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commit | commitdiff | tree |
| 2020-10-22 |
gmungoc | JAL-3763 always make a new dataset sequence for CDS...
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commit | commitdiff | tree |
| 2020-10-22 |
gmungoc | JAL-3700 additions and corrections to unit tests
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commit | commitdiff | tree |
| 2020-09-16 |
gmungoc | JAL-3700 fix for propagation of sort commands
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commit | commitdiff | tree |
| 2020-09-16 |
gmungoc | JAL-3700 check for 'covering' mapping when matching...
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commit | commitdiff | tree |
| 2020-09-03 |
gmungoc | JAL-3648 resize annotation panel after dragging to...
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commit | commitdiff | tree |
| 2020-08-18 |
gmungoc | JAL-3692 parse multiline CDS location correctly
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commit | commitdiff | tree |
| 2020-08-13 |
gmungoc | JAL-3597 slight tidying of code and Javadoc, passmark...
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commit | commitdiff | tree |
| 2020-08-13 |
gmungoc | JAL-3597 additional references nulled, bug in test...
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commit | commitdiff | tree |
| 2020-08-11 |
gmungoc | JAL-3371 more fine-grained slider; set Param slider...
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commit | commitdiff | tree |
| 2020-08-10 |
gmungoc | JAL-3490 match count independent of contiguous matches...
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commit | commitdiff | tree |
| 2020-08-05 |
gmungoc | JAL-3692 unit test updated for ?gzip download endpoint URL
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commit | commitdiff | tree |
| 2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped...
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test...
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 parse DE for description, and other refactoring...
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 URL tests updated
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: protein...
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
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commit | commitdiff | tree |
| 2020-07-27 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for...
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commit | commitdiff | tree |
| 2020-07-27 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam
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commit | commitdiff | tree |
| 2020-07-27 |
gmungoc | JAL-3621 corrected sequence feature sort and test
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commit | commitdiff | tree |
| 2020-07-27 |
gmungoc | JAL-3621 update to intervalstore v1.1
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commit | commitdiff | tree |
| 2020-07-06 |
gmungoc | JAL-3570 JAL-3187 spanish translations for tabbed feature...
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commit | commitdiff | tree |
| 2020-07-06 |
gmungoc | JAL-3570 updated external help links
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commit | commitdiff | tree |
| 2020-05-18 |
gmungoc | JAL-3613 remove debug code committed in error
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commit | commitdiff | tree |
| 2020-05-01 |
gmungoc | Merge branch 'bug/JAL-3613emblCDSTracking' into releases...
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commit | commitdiff | tree |
| 2020-05-01 |
gmungoc | JAL-3613 check sequence overlap when matching search...
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commit | commitdiff | tree |
| 2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips
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commit | commitdiff | tree |
| 2020-04-16 |
gmungoc | JAL-3567 adjust layout of linked feature report, unit...
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commit | commitdiff | tree |
| 2020-04-16 |
gmungoc | JAL-3567 added 'imputed by Jalview' to protein consequence...
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commit | commitdiff | tree |
| 2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features...
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commit | commitdiff | tree |
| 2020-04-13 |
gmungoc | JAL-3574 test coverage corners
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commit | commitdiff | tree |
| 2020-04-13 |
gmungoc | JAL-3574 Matcher with integer/long value pattern (e...
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commit | commitdiff | tree |
| 2020-04-12 |
gmungoc | JAL-3596 change redacted
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commit | commitdiff | tree |
| 2020-04-12 |
gmungoc | JAL-3596 don't draw text over features if Show Text...
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commit | commitdiff | tree |
| 2020-04-06 |
gmungoc | JAL-3581 no hidden sequence marker if hidden markers...
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commit | commitdiff | tree |
| 2020-04-06 |
gmungoc | JAL-3579 no Feature Editor if features not shown
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commit | commitdiff | tree |
| 2020-03-31 |
gmungoc | JAL-1889 better (?) wait for Conservation thread
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commit | commitdiff | tree |
| 2020-03-19 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2020-03-19 |
gmungoc | JAL-3305 don't propagate an empty SelectionGroup to...
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3528 unit tests added for failed lookup, Javadoc
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3407 3549 in release notes
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3549 JAL-3305 no Sort By Score / Density if no...
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3412 update layout whenever desired id width changes
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3187 unit test for findComplementFeaturesAtResidue
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3407 added 3468 to release notes
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | Merge branch 'feature/JAL-3468featureDescriptionEllipsis...
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3468 i18n and additional unit tests
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3407 release note tweaks, added 3533 3538 3534...
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commit | commitdiff | tree |
| 2020-03-05 |
gmungoc | Merge branch 'releases/Release_2_11_1_Branch' of https...
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commit | commitdiff | tree |
| 2020-03-05 |
gmungoc | JAL-3303 suppressed for 2.11.1
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commit | commitdiff | tree |
| 2020-02-20 |
gmungoc | JAL-3187 repaint complement after loading on features
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commit | commitdiff | tree |
| 2020-02-06 |
gmungoc | JAL-1842 unit test updated for EnsemblGene feature...
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commit | commitdiff | tree |
| 2020-02-06 |
gmungoc | JAL-1842 adjust code to match changed semantics of...
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commit | commitdiff | tree |
| 2020-02-06 |
gmungoc | JAL-3509 JAL-1842 minor tidying of code
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commit | commitdiff | tree |
| 2020-02-06 |
gmungoc | JAL-1842 remove redundant call to FeatureRenderer.featuresAd...
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commit | commitdiff | tree |
| 2020-02-06 |
gmungoc | JAL-3509 better placement of call to notifyFeaturesChanged()
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commit | commitdiff | tree |
| 2020-02-06 |
gmungoc | JAL-3509 coerce RESNUM to hidden (really) after fetching...
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | JAL-3341 debug for failing unit test
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | Merge branch 'feature/JAL-3121gffAttributeMap' into...
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | JAL-3187 one more obsolete method removed
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commit | commitdiff | tree |
| 2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text...
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commit | commitdiff | tree |
| 2020-01-23 |
gmungoc | JAL-3121 update help page for GFF column 9 nested attributes
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commit | commitdiff | tree |
| 2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ...
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commit | commitdiff | tree |
| 2019-12-12 |
gmungoc | JAL-3490 unit test for ignore hidden regions with selection...
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commit | commitdiff | tree |
| 2019-12-11 |
gmungoc | JAL-3490 tests for skip hidden regions (and a bug fix)
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commit | commitdiff | tree |
| 2019-12-11 |
gmungoc | JAL-3490 extract constants for number of rows in layout
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commit | commitdiff | tree |
| 2019-12-11 |
gmungoc | JAL-3490 revised layout and search algorithm (more...
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commit | commitdiff | tree |
| 2019-12-09 |
gmungoc | JAL-3490 pull up getViewAsVisibleContigs to base class...
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commit | commitdiff | tree |
| 2019-11-29 |
gmungoc | JAL-3490 Finder match across entirely gapped hidden...
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commit | commitdiff | tree |
| 2019-11-01 |
gmungoc | JAL-3468 unit tests updated for changes
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commit | commitdiff | tree |
| 2019-10-31 |
gmungoc | JAL-3468 truncate feature description to 40 chars in...
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commit | commitdiff | tree |
| 2019-09-26 |
gmungoc | JAL-2481 remove code duplication left by merge
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commit | commitdiff | tree |
| 2019-09-26 |
gmungoc | JAL-3441 action double-click in Feature Type column...
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commit | commitdiff | tree |
| 2019-08-23 |
gmungoc | JAL-3141 correct cast of spinner value
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test...
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | Merge branch 'develop' into feature/JAL-3121gffAttributeMap
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3187 case-insensitive codon variant calculation
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued...
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3187 one more obsolete method removed
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commit | commitdiff | tree |
| 2019-08-21 |
gmungoc | JAL-3187 minor code tidying, todo removal
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commit | commitdiff | tree |
| 2019-08-19 |
gmungoc | JAL-3412 calculateIdWidth - more consistency, constants...
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commit | commitdiff | tree |
| 2019-08-09 |
gmungoc | JAL-3187 removal of variant feature (non-virtual) transfer...
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commit | commitdiff | tree |
| 2019-08-07 |
gmungoc | JAL-3187 (fudge) look in both alignments for stored...
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commit | commitdiff | tree |
| 2019-08-07 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures
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commit | commitdiff | tree |
| 2019-07-31 |
gmungoc | JAL-3389 add .py to restored Chimera session filename...
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commit | commitdiff | tree |
| 2019-07-31 |
gmungoc | Merge branch 'bug/JAL-3388structureChooserSorting'...
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commit | commitdiff | tree |
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