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Merge branch 'JAL-1199-Stk_writing' into rnaml_test
2013-02-14 Jim ProcterMerge branch 'JAL-1199-Stk_writing' into rnaml_test
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2013-02-14 Jim ProcterJAL-1140 reinstate the simpler version of parsing code...
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2013-02-14 Jim Procterpatch for bizarre ConcurrentModificationException that...
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2013-02-13 Jim ProcterMerge branch 'jims_annotate3d_update' into menard_finalsep2012
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2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced...
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2013-02-13 jprocterJAL-1216 switch to official release of VARNA 3.9
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2013-02-13 jprocterJAL-1213 JAL-674 robust test with an existing structure...
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2013-02-13 jprocterJAL-1214 todo
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2013-02-13 jprocterJAL-1213 JAL-674 - import a PDB file using Jmol data...
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2013-02-13 jprocterJAL-674 commented out annotate3d calling code for Jmol...
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2013-02-13 jprocterJAL-1028 JAL-674 hooks to call external processing...
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2012-02-12 Jim Procter(JAL-1016) noted position where race condition occurs
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2012-02-12 Jim Procter(JAL-1022) ensure all Jmol model filenames are normalised...
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2012-02-12 Jim Procter(JAL-1022) reverted to original strategy of escaping...
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2012-02-12 Jim Procter(JAL-1050) ensure all filenames passed in to the load...
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2012-02-12 Jim Procter(JAL-1025 JAL-1022) File based equivalence used to...
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2012-02-12 Jim Procter(JAL-1049) only store state reference for sequence...
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2012-02-12 Jim ProcterJAL-1025 JAL-1022 use File based equivalence to map...
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2012-02-12 Jim ProcterJAL-715 - remove platform dependent includes
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2011-05-05 jprocteruncommentable debug message for JAL-771
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2011-05-05 jprocterhtml tags
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2011-05-05 jprocterimproved javascript callback execution thread and provided...
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2011-05-05 jprocterseparation of jmol script command generation from jmol...
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2011-05-05 jprocterjavadoc and informative error message when external...
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2011-05-05 jprocterensure feature renderer settings come from the given...
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2011-05-05 jprocteradded simple stdout debug function
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2011-04-25 jprocterJAL-824 - additional methods to allow jmol colouring...
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2011-04-25 jprocterJAL-824 - patch to schema to allow jmol colouring state...
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2011-04-25 jproctertoggle of inclusion/exclusion of views for colouring...
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2011-04-25 jprocterJAL-824 - ensure Jmol colouring is a radio button
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2011-04-25 jprocterdocumentation for JAL-824 and JAL-621
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2011-04-25 jprocterdocumentation for JAL-732
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2011-04-25 jprocterhtmlfix
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2011-04-22 jprocterformatting
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2011-04-22 jprocterremoved useless flag (was always null for button press...
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2011-04-22 jprocterJAL-823 and JAL-824 - seqColour no longer the default...
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2011-04-22 jproctercomments re JAL-823 legacy issue
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2011-04-22 jprocterclarify tooltip
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2011-04-22 jproctermoved loadingFromArchive flag modification to after...
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2011-04-22 jprocteroption for enabling Jmol colouring mode JAL-824
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2011-04-21 jprocterJAL-641 patch
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2011-04-21 jprocterpatch for JAL-733
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2011-04-21 jprocterpatch for JAL-820 and JAL-821
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2011-04-21 jprocterseparated alignment annotation height calculation from...
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2011-04-21 jproctermoved to same place as in jalview.gui
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2011-04-21 jproctersave and recover graph height, visibility and row position...
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2011-04-21 jprocterallow an alignment annotation row to be removed and...
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2011-04-21 jprocterallow an existing alignment annotation row to be bound...
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2011-04-21 jprocteradded graphHeight attribute to schema (JAL-784)
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2011-04-19 jprocteravoid race condition when featureRenderer for structure...
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2011-04-19 jprocterpatched XML parser to ensure it properly escapes non...
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2011-04-08 jproctertodo
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2011-04-08 jprocterimported properties via -props should never be overwritten
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2011-04-08 jprocterallow groovy scripts to be run when in headless mode...
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2011-04-07 jprocterallow groovy scripts to be run when in headless mode...
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2011-04-07 jprocterallow groovy scripts to be run when in headless mode...
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2011-04-07 jprocterresolves JAL-805
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2011-04-07 jprocterresolves JAL-804
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2011-02-28 jprocterexcess imports
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2011-02-27 jprocterpatch for JAL-780
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2011-02-27 jprocterpatch for occasional ArrayIndexOutOfBounds
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2011-02-27 jprocterpatch for JAL-792
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2011-02-27 jprocterfirst patch for JAL-774 - ensure end is a valid bound...
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2011-02-25 jprocterfirst approximation for JAL-782 - hint that opaque...
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2011-02-18 jprocterJAL-777/JAL-641 debugging
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2011-02-18 jprocternew alignmentPanel api + JAL-777/JAL-641 debugging
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2011-02-18 jprocterfix scrolltoposition behaviour and new alignmentPanel api
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2011-02-18 jprocterfix scrolltoposition behaviour
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2011-02-18 jprocterJAL-574
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2011-02-18 jprocterconvenience method to discover all Jmols
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2011-02-18 jprocterJAL-779 and some redraw refinements
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2011-02-18 jprocterJAl-574
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2011-02-18 jprocteravoid exceptions for orphaned windows
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2011-02-18 jprocterbugfixing for JAL-778
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2011-02-18 jprocternew multiple multiple view associations JAL-777
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2011-02-18 jproctercall to release any explicit event handler references...
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2011-02-18 jprocterdynamic alignmentPanel menu class
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2011-02-18 jproctercall to release any explicit event handler references
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2011-02-18 jprocterremoved explicit 'linkedAlignmentPanel' flag
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2011-02-18 jprocterfix for occasional race conditions
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2011-02-17 jprocterfixes JAL-778 - flag to indicate binding between an...
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2011-02-17 jprocterprotype api
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2011-02-17 jprocterclassCast exception - attempting to update registry...
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2011-02-15 jprocterfix for JAL-776
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2011-02-15 jprocterfixes JAL-775
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2011-02-14 jprocterJAL-769
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2011-02-14 jprocterJAL-564 (annotation panel height adjustment) and alignment...
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2011-02-14 jprocterJAL-621 (mouseover debugging) and JAL-564 (annotation...
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2011-02-14 jprocterJAL-621 and JAL-564
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2011-02-14 jprocterJAL-621 - also renamed list of javascript handlers
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2011-02-14 jprocterrefactored annotation panel height calculation
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2011-02-14 jprocterJAL-621 - also renamed list of javascript handlers
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2011-02-14 jprocterjavadoc
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2011-02-04 jprocterBalascz reported problems - jalview tries to write...
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2011-02-04 jprocterJAL-761
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2011-02-04 jprocter1.2ish awt methods
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2011-02-04 jprocterjava 1.4.2 applet build
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2011-02-04 jprocter1.2ish awt methods and excluding unused code
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2011-02-04 jprocterdon't need to retrieve idwidthadjuster
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2011-02-04 jprocterjavadoc
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