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2022-11-08	Ben Soares	JAL-1988 JAL-3772 Fixes highlighted by tests	commit \| commitdiff \| tree
2022-11-03	Ben Soares	JAL-1988 JAL-3772 Allow other window closing dialogs...	commit \| commitdiff \| tree
2022-11-03	Ben Soares	JAL-1988 JAL-3772 Tidying of unspecified Callable declaratio...	commit \| commitdiff \| tree
2022-11-02	Ben Soares	JAL-1988 JAL-3772 Moving packages to somewhere more...	commit \| commitdiff \| tree
2022-11-01	Ben Soares	JAL-1988 JAL-3772 Change default alignmentviewport...	commit \| commitdiff \| tree
2022-10-29	Ben Soares	JAL-1988 JAL-3772 removed a debugging log line	commit \| commitdiff \| tree
2022-10-28	Ben Soares	JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...	commit \| commitdiff \| tree
2022-10-28	Ben Soares	JAL-1988 JAL-3772 Fixed wait between waitDialog appearances...	commit \| commitdiff \| tree
2022-10-27	Ben Soares	JAL-1988 Allow generic Container object in JvOptionPane...	commit \| commitdiff \| tree
2022-10-27	Ben Soares	Merge branch 'develop' into bug/JAL-1988_JAL-3772_improved_q...	commit \| commitdiff \| tree
2022-10-26	Ben Soares	JAL-3416 (and others) increasing number of STDERR lines...	commit \| commitdiff \| tree
2022-10-25	Ben Soares	JAL-3416 Making FlatLaF default for macs due to a problem...	commit \| commitdiff \| tree
2022-10-24	Ben Soares	JAL-1988 JAL-3772 wait timer working first time but...	commit \| commitdiff \| tree
2022-10-24	Ben Soares	JAL-1988 JAL-3772 Non-blocking modal dialogs for unsaved...	commit \| commitdiff \| tree
2022-10-11	Ben Soares	JAL-4014 Changed gecos display names to match labels...	commit \| commitdiff \| tree
2022-09-29	Ben Soares	Merge branch 'develop' into bug/JAL-1988_JAL-3772_improved_q...	commit \| commitdiff \| tree
2022-09-26	Ben Soares	JAL-1988 JAL-3772 linked undostack to saved changes...	commit \| commitdiff \| tree
2022-09-26	Ben Soares	JAL-1988 better wording for quit dialog	commit \| commitdiff \| tree
2022-09-23	Ben Soares	JAL-1988 JAL-3772 Quit confirmation dialog boxes with...	commit \| commitdiff \| tree
2022-09-23	Ben Soares	JAL-3676 extra information about jalview_properties...	commit \| commitdiff \| tree
2022-09-23	Ben Soares	JAL-1988 property based fake delay whilst saving project...	commit \| commitdiff \| tree
2022-08-23	Ben Soares	JAL-4014 JAL-4063 Added gecos colourScheme names (INFO...	commit \| commitdiff \| tree
2022-07-26	Ben Soares	JAL-4036 Fixed the virus_host_id query field	commit \| commitdiff \| tree
2022-07-26	Ben Soares	JAL-4036 Added text to help about different number...	commit \| commitdiff \| tree
2022-07-25	Ben Soares	JAL-4036 updated help about new UniProt API	commit \| commitdiff \| tree
2022-07-25	Ben Soares	JAL-4036 moved a comment block	commit \| commitdiff \| tree
2022-07-25	Ben Soares	JAL-4034 button looks better also on other OSes with...	commit \| commitdiff \| tree
2022-07-22	Ben Soares	JAL-4036 Changes made from code review CR-JAL-265	commit \| commitdiff \| tree
2022-07-22	Ben Soares	JAL-4036 Add getDbName to the GFTSPanelI and add an...	commit \| commitdiff \| tree
2022-07-22	Ben Soares	JAL-4036 removing the query field code from the dropdown...	commit \| commitdiff \| tree
2022-07-21	Ben Soares	JAL-4036 Don't autosearch changing index when autosearch...	commit \| commitdiff \| tree
2022-07-21	Ben Soares	JAL-4036 add search fieldname to dropdown list	commit \| commitdiff \| tree
2022-07-21	Ben Soares	JAL-4036 removed often duplicated pluralisation in...	commit \| commitdiff \| tree
2022-07-21	Ben Soares	JAL-4036 New configuration, target and pagination process...	commit \| commitdiff \| tree
2022-07-15	Ben Soares	JAL-4034 Use the new non-modal JDialog for 3DBeacons...	commit \| commitdiff \| tree
2022-07-15	Ben Soares	JAL-4034 Allow request for non-modal JDialog, which...	commit \| commitdiff \| tree
2022-07-12	Ben Soares	JAL-4034 change to jalview property name	commit \| commitdiff \| tree
2022-07-12	Ben Soares	JAL-4034 showConfirmDialog works for both desktop and...	commit \| commitdiff \| tree
2022-07-11	Ben Soares	JAL-4034 Non-blocking 3D Beacons query after warning...	commit \| commitdiff \| tree
2022-07-11	Ben Soares	JAL-4034 allow a jalview_property to set the threshold...	commit \| commitdiff \| tree
2022-06-28	Ben Soares	Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS_APQH...	commit \| commitdiff \| tree
2022-06-28	Ben Soares	JAL-1988 Don't put Quit in the File menu if there's...	commit \| commitdiff \| tree
2022-06-23	Ben Soares	Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS_APQH...	commit \| commitdiff \| tree
2022-06-23	Ben Soares	JAL-1988 Check for setHandler capability to avoid About...	commit \| commitdiff \| tree
2022-06-13	Ben Soares	JAL-1988 Hack to ensure Quit dialog box is moved to...	commit \| commitdiff \| tree
2022-06-13	Ben Soares	JAL-4004 Fix missing whatsNew.html when not building...	commit \| commitdiff \| tree
2022-06-07	Ben Soares	JAL-4020 class formatting	commit \| commitdiff \| tree
2022-06-06	Ben Soares	JAL-4020 updated tests	commit \| commitdiff \| tree
2022-06-06	Ben Soares	JAL-4020 class reformatting	commit \| commitdiff \| tree
2022-04-27	Ben Soares	JAL-1544 version number typo, probably copy and paste	commit \| commitdiff \| tree
2022-04-27	Ben Soares	JAL-3989 Populate template files for hugo build: archive...	commit \| commitdiff \| tree
2022-04-25	Ben Soares	JAL-3989 moved getdown build dirs to build/website...	commit \| commitdiff \| tree
2022-04-25	Ben Soares	JAL-3989 Independent creation of JSON installer sections	commit \| commitdiff \| tree
2022-04-21	Ben Soares	Merge branch 'develop' into merge/JAL-3978+JAL-3553...	commit \| commitdiff \| tree
2022-04-21	Ben Soares	Merge branch 'develop' into task/JAL-3991_check_actual_JAVA_...	commit \| commitdiff \| tree
2022-04-06	Ben Soares	JAL-3991 Made info displayed only when needed (Java...	commit \| commitdiff \| tree
2022-04-06	Ben Soares	JAL-3991 Added information output about the slightly...	commit \| commitdiff \| tree
2022-04-06	Ben Soares	JAL-3991 JAVA_COMPILE_VERSION put into build_properties...	commit \| commitdiff \| tree
2022-04-05	Ben Soares	JAL-3989 slight refactor of build.gradle, add more...	commit \| commitdiff \| tree
2022-04-04	Ben Soares	JAL-3989 fix a build date once in build.gradle, not...	commit \| commitdiff \| tree
2022-03-31	Ben Soares	Merge branch 'task/JAL-3553_improved_install4j_output_txt...	commit \| commitdiff \| tree
2022-03-31	Ben Soares	Merge branch 'develop' into improvement/JAL-3978_add_gradle_...	commit \| commitdiff \| tree
2022-03-21	Ben Soares	JAL-3416 Updated FlatLaF to 2.1	commit \| commitdiff \| tree
2022-03-18	Ben Soares	JAL-3978 Using getdowninstanceappdir and getdowninstanceappb...	commit \| commitdiff \| tree
2022-03-18	Ben Soares	JAL-3978 Getdown add getdownappbase property to launched...	commit \| commitdiff \| tree
2022-03-18	Ben Soares	JAL-3978 New tasks to build archive 'old' dir with...	commit \| commitdiff \| tree
2022-03-16	Ben Soares	JAL-3978 task stub and getdown splash screens	commit \| commitdiff \| tree
2022-03-13	Ben Soares	Append git.hash and git.branch to RELEASE file stored...	commit \| commitdiff \| tree
2022-03-11	Ben Soares	JAL-3973 This fixes the gradle build when not in a...	commit \| commitdiff \| tree
2022-03-08	Ben Soares	JAL-3103 updated help doc to remove default browser...	commit \| commitdiff \| tree
2022-03-08	Ben Soares	JAL-3103 Removed code and unused widgets for defaultBrowser	commit \| commitdiff \| tree
2022-03-08	Ben Soares	JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...	commit \| commitdiff \| tree
2022-03-08	Ben Soares	JAL-3103 add BrowserLauncher2 LGPLv2.1 to THIRDPARTYLIBS	commit \| commitdiff \| tree
2022-03-08	Ben Soares	JAL-3103 Put jalview.jar first in getdown for .properties...	commit \| commitdiff \| tree
2022-03-07	Ben Soares	JAL-3103 Switched to (a wrapper around) BrowserLauncher2	commit \| commitdiff \| tree
2022-03-04	Ben Soares	JAL-3830 added command line to whatsnew and releases	commit \| commitdiff \| tree
2022-03-04	Ben Soares	JAL-3830 Added new command line usage to docs	commit \| commitdiff \| tree
2022-03-04	Ben Soares	JAL-3608 added to LaF documentation	commit \| commitdiff \| tree
2022-03-03	Ben Soares	JAL-3830 fix broken/buggy install4j9 setting of executeSetup...	commit \| commitdiff \| tree
2022-03-02	Ben Soares	JAL-3691 bumped the version to 1.8.3-1.2.12 in source...	commit \| commitdiff \| tree
2022-03-02	Ben Soares	JAL-3962 Added jre/bin and dist folders to the native...	commit \| commitdiff \| tree
2022-03-02	Ben Soares	JAL-3130 updated download_jres.sh	commit \| commitdiff \| tree
2022-02-12	Ben Soares	JAL-3949 fix testProps path and make line count more...	commit \| commitdiff \| tree
2022-02-11	Ben Soares	Merge branch 'update/JAL-3949_jalview_bin_Console_to_cure_sa...	commit \| commitdiff \| tree
2022-02-11	Ben Soares	JLogger loglevel check on whether to call the actual...	commit \| commitdiff \| tree
2022-02-11	Ben Soares	JAL-3949 fixed failing commandlinetests due to more...	commit \| commitdiff \| tree
2022-02-11	Ben Soares	JAL-3949 added Java Console autoscrolling help paragraph	commit \| commitdiff \| tree
2022-02-11	Ben Soares	JAL-3949 read ~/.jalview_properties before initialising...	commit \| commitdiff \| tree
2022-02-11	Ben Soares	Merge branch 'develop' into update/JAL-3949_abstracted_loggi...	commit \| commitdiff \| tree
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	commit \| commitdiff \| tree
2022-02-04	Ben Soares	JAL-3949 An attempt at converting to Log4j 2 -- no...	commit \| commitdiff \| tree
2022-02-03	Ben Soares	JAL-3949 upgraded log4j to 2.17.1 (no actual known...	commit \| commitdiff \| tree
2022-01-29	Ben Soares	JAL-3830 JAL-3420 added new jvl_file to install4j9...	commit \| commitdiff \| tree
2022-01-29	Ben Soares	Merge branch 'develop' into improvement/JAL-3830_install4j9_...	commit \| commitdiff \| tree
2022-01-28	Ben Soares	Merge branch 'develop' into improvement/JAL-3420_match_jvl_i...	commit \| commitdiff \| tree
2022-01-28	Ben Soares	new jvl_file svg, png, ico and icns files, and changed...	commit \| commitdiff \| tree
2022-01-28	Ben Soares	Merge branch 'develop' into JAL-3416_different_look_and_feel...	commit \| commitdiff \| tree
2022-01-27	Ben Soares	update to flatlaf 2.0.1	commit \| commitdiff \| tree
2022-01-12	Ben Soares	JAL-3703 Test that fails in Windows only, and only...	commit \| commitdiff \| tree
2022-01-11	Ben Soares	JAL-3703 fix Gff3 shared InputStream with embedded...	commit \| commitdiff \| tree
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