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JAL-3063 first version of Jalview2XML using JAXB to (un)marshal
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to...
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2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from...
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2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML...
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2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enumerated...
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2018-09-17 gmungocJAL-3116 test method renamed to match code
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2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB
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2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor
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2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
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2018-09-12 gmungocJAL-1551 reinstated Save actions
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2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_Branch
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2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup
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2018-08-28 gmungocJAL-3059 use correct border colour for groups
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2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics...
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2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm
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2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw...
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2018-08-28 gmungocJAL-3087 include full alignment height in repeating...
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2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code...
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2018-08-15 gmungocJAL-3080 remove tree partition if no groups created
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2018-08-14 gmungocJAL-3078 reset Tree font (only!) on Cancel
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2018-08-10 gmungocJAL-3018 updated to Ensembl REST 7.0
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2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene...
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2018-08-10 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of...
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2018-06-07 gmungocJAL-2755 correct Javadoc and error handling
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2018-06-07 gmungocJAL-2920 format/comment tidy
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2018-06-07 gmungocJAL-2920 wrap description in <html/> if it includes...
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2018-06-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' of https...
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2018-06-06 gmungocJAL-2920 unit tests for 3 or more original or variant...
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2018-06-06 gmungocJAL-3013 ensure Chimera as a symlink gets resolved
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2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed...
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2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList
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2018-06-04 gmungocJAL-3018 updated REST versions to 6.3
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2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed...
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2018-05-31 gmungocJAL-2808 pre-fill numeric inequality filter with min...
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2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop
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2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-05-25 gmungocJAL-2992 simpler heuristic for available height
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2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse...
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2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for...
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2018-05-24 gmungocJAL-2997 additional tests
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2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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2018-05-23 gmungocJAL-2997 unit test
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2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number...
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2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
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2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature
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2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue...
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2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates
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2018-05-11 gmungocJAL-2986 failing test added
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2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure...
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2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun
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2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
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2018-05-04 gmungocJAL-2906 small tweaks to release notes
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2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled
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2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns
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2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnnotati...
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2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
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2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
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2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelectedView...
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2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelectionM...
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2018-04-12 gmungocJAL-1847 minor post-review updates
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2018-04-12 gmungocJAL-2944 tidies for review comments
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2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters
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2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead...
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2018-03-21 gmungocJAL-2754 renamed proguard.jar to include version number
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2018-03-21 gmungocJAL-2754 5.3.3 update of proguard.jar
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2018-03-21 gmungocJAL-2754 update to specify Java 1.8(+)
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2018-03-21 gmungocJAL-2754 update to Java 1.8
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2018-03-16 gmungocJAL-2679 getGeneId() now uses the same pattern as getGeneLoc...
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2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature...
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2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop
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2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
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2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
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2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
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2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
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2018-03-08 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-08 gmungocJAL-2885 tests updated for code changes
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2018-03-08 gmungocJAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
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2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07 gmungocJAL-2922 [2] not [1] for Boolean column of table
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2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07 gmungocJAL-2922 i18n and bespoke handler for Invert Selection
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2018-03-07 gmungocMerge branch 'bug/JAL-2924nullTooltip' into releases...
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2018-03-07 gmungocJAL-2926 fix copy group consensus (and paste sequence...
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2018-03-07 gmungocJAL-2925 handle empty annotation when copying group...
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2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
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2018-02-28 gmungocJAL-2924 no tooltip over null annotation positions
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2018-02-20 gmungocJAL-2897 updated unit test for code change
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2018-02-20 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2018-02-09 gmungocJAL-2789 avoid using transcript (with no UTR) as CDS...
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2018-02-09 gmungocJAL-2789 code format changes only (before functional...
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2018-02-09 gmungocJAL-2666 fix failure to scroll split alignment of height 1
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2018-02-08 gmungocJAL-2666 basic initial fix for split screen scroll bug
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2018-02-07 gmungocJAL-2808 ensure pattern field re-enabled when needed...
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2018-02-05 gmungocJAL-2897 more informative description on synonymous...
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2018-02-05 gmungocJAL-2897 more informative description on synonymous...
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2018-02-05 gmungocMerge branch 'spikes/mungo' into trialMerge
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