| 2020-08-18 |
gmungoc | JAL-1260 refactored multi-line qualifier separators
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commit | commitdiff | tree |
| 2020-08-18 |
gmungoc | JAL-1260 unit test for FileFormats updated for GenBank/ENA
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commit | commitdiff | tree |
| 2020-08-18 |
gmungoc | JAL-1260 file formats and IdentifyFile updates for...
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commit | commitdiff | tree |
| 2020-08-18 |
gmungoc | JAL-1260 refactored GenBank (and EMBL) flat file parser
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commit | commitdiff | tree |
| 2020-08-17 |
gmungoc | JAL-3692 unit test updated for ?gzip download endpoint URL
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commit | commitdiff | tree |
| 2020-08-17 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped...
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test...
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 parse DE for description, and other refactoring...
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 URL tests updated
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: protein...
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commit | commitdiff | tree |
| 2020-08-03 |
gmungoc | JAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
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commit | commitdiff | tree |
| 2020-07-27 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for...
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commit | commitdiff | tree |
| 2020-07-27 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam
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commit | commitdiff | tree |
| 2020-07-27 |
gmungoc | JAL-3621 corrected sequence feature sort and test
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commit | commitdiff | tree |
| 2020-07-27 |
gmungoc | JAL-3621 update to intervalstore v1.1
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commit | commitdiff | tree |
| 2020-07-06 |
gmungoc | JAL-3570 JAL-3187 spanish translations for tabbed feature...
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commit | commitdiff | tree |
| 2020-07-06 |
gmungoc | JAL-3570 updated external help links
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commit | commitdiff | tree |
| 2020-05-18 |
gmungoc | JAL-3613 remove debug code committed in error
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commit | commitdiff | tree |
| 2020-05-01 |
gmungoc | Merge branch 'bug/JAL-3613emblCDSTracking' into releases...
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commit | commitdiff | tree |
| 2020-05-01 |
gmungoc | JAL-3613 check sequence overlap when matching search...
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commit | commitdiff | tree |
| 2020-04-17 |
gmungoc | JAL-3567 unit tests for linked feature tooltips
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commit | commitdiff | tree |
| 2020-04-16 |
gmungoc | JAL-3567 adjust layout of linked feature report, unit...
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commit | commitdiff | tree |
| 2020-04-16 |
gmungoc | JAL-3567 added 'imputed by Jalview' to protein consequence...
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commit | commitdiff | tree |
| 2020-04-16 |
gmungoc | JAL-3567 report mapped location for virtual features...
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commit | commitdiff | tree |
| 2020-04-13 |
gmungoc | JAL-3574 test coverage corners
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commit | commitdiff | tree |
| 2020-04-13 |
gmungoc | JAL-3574 Matcher with integer/long value pattern (e...
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commit | commitdiff | tree |
| 2020-04-12 |
gmungoc | JAL-3596 change redacted
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commit | commitdiff | tree |
| 2020-04-12 |
gmungoc | JAL-3596 don't draw text over features if Show Text...
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commit | commitdiff | tree |
| 2020-04-06 |
gmungoc | JAL-3581 no hidden sequence marker if hidden markers...
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commit | commitdiff | tree |
| 2020-04-06 |
gmungoc | JAL-3579 no Feature Editor if features not shown
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commit | commitdiff | tree |
| 2020-03-31 |
gmungoc | JAL-1889 better (?) wait for Conservation thread
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commit | commitdiff | tree |
| 2020-03-19 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2020-03-19 |
gmungoc | JAL-3305 don't propagate an empty SelectionGroup to...
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3528 unit tests added for failed lookup, Javadoc
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3407 3549 in release notes
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3549 JAL-3305 no Sort By Score / Density if no...
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commit | commitdiff | tree |
| 2020-03-09 |
gmungoc | JAL-3412 update layout whenever desired id width changes
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3187 unit test for findComplementFeaturesAtResidue
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3407 added 3468 to release notes
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | Merge branch 'feature/JAL-3468featureDescriptionEllipsis...
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3468 i18n and additional unit tests
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commit | commitdiff | tree |
| 2020-03-06 |
gmungoc | JAL-3407 release note tweaks, added 3533 3538 3534...
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commit | commitdiff | tree |
| 2020-03-05 |
gmungoc | Merge branch 'releases/Release_2_11_1_Branch' of https...
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commit | commitdiff | tree |
| 2020-03-05 |
gmungoc | JAL-3303 suppressed for 2.11.1
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commit | commitdiff | tree |
| 2020-02-20 |
gmungoc | JAL-3187 repaint complement after loading on features
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commit | commitdiff | tree |
| 2020-02-18 |
Mungo Carstairs | JAL-3536 JAL-3187 don't create duplicate CDS-to-protein...
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | JAL-3341 debug for failing unit test
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | Merge branch 'feature/JAL-3121gffAttributeMap' into...
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commit | commitdiff | tree |
| 2020-01-28 |
gmungoc | JAL-3187 one more obsolete method removed
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commit | commitdiff | tree |
| 2020-01-24 |
gmungoc | JAL=3121 more data format validation/tests, help text...
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commit | commitdiff | tree |
| 2020-01-23 |
gmungoc | JAL-3121 update help page for GFF column 9 nested attributes
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commit | commitdiff | tree |
| 2020-01-23 |
gmungoc | JAL-3121 'attributes map' in GFF3 without special ...
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commit | commitdiff | tree |
| 2019-11-01 |
gmungoc | JAL-3468 unit tests updated for changes
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commit | commitdiff | tree |
| 2019-10-31 |
gmungoc | JAL-3468 truncate feature description to 40 chars in...
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commit | commitdiff | tree |
| 2019-09-26 |
gmungoc | JAL-2481 remove code duplication left by merge
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commit | commitdiff | tree |
| 2019-09-26 |
gmungoc | JAL-3441 action double-click in Feature Type column...
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commit | commitdiff | tree |
| 2019-08-23 |
gmungoc | JAL-3141 correct cast of spinner value
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3121 slightly cleaner parsing of, and unit test...
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | Merge branch 'develop' into feature/JAL-3121gffAttributeMap
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3187 case-insensitive codon variant calculation
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3121 round trip GFF attributes including map-valued...
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commit | commitdiff | tree |
| 2019-08-22 |
gmungoc | JAL-3187 one more obsolete method removed
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commit | commitdiff | tree |
| 2019-08-21 |
gmungoc | JAL-3187 minor code tidying, todo removal
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commit | commitdiff | tree |
| 2019-08-19 |
gmungoc | JAL-3412 calculateIdWidth - more consistency, constants...
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commit | commitdiff | tree |
| 2019-08-09 |
gmungoc | JAL-3187 removal of variant feature (non-virtual) transfer...
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commit | commitdiff | tree |
| 2019-08-07 |
gmungoc | JAL-3187 (fudge) look in both alignments for stored...
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commit | commitdiff | tree |
| 2019-08-07 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures
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commit | commitdiff | tree |
| 2019-07-31 |
gmungoc | JAL-3389 add .py to restored Chimera session filename...
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commit | commitdiff | tree |
| 2019-07-31 |
gmungoc | Merge branch 'bug/JAL-3388structureChooserSorting'...
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commit | commitdiff | tree |
| 2019-07-30 |
gmungoc | JAL-3198 more efficient Sequence.getDisplayId()
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commit | commitdiff | tree |
| 2019-07-30 |
gmungoc | JAL-3388 correct class for column 0 Ref Sequence
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3386 correct wrapped width calculation for headless...
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 more reused of SeqCanvas.computeWrappedGeometry
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 add seq-annotations gap to cheight not to...
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 Javadoc added for getWrappedHeight()
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 corrected wrapped widths height for IdCanvas
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commit | commitdiff | tree |
| 2019-07-29 |
gmungoc | JAL-3377 include seq-annotation spacing in getWrappedHeight()
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commit | commitdiff | tree |
| 2019-07-26 |
gmungoc | Merge branch 'features/JAL-3375vcfValidation' into
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commit | commitdiff | tree |
| 2019-07-26 |
gmungoc | JAL-1793 only decode specific special characters in...
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commit | commitdiff | tree |
| 2019-07-26 |
gmungoc | JAL-3376 capture VCF POS, ID, QUAL, FILTER as feature...
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commit | commitdiff | tree |
| 2019-07-26 |
gmungoc | JAL-3375 format validate VCF Integer and Float fields
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commit | commitdiff | tree |
| 2019-07-25 |
gmungoc | JAL-3375 ignore '.' values for VCF data
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commit | commitdiff | tree |
| 2019-07-19 |
gmungoc | JAL-3371 lastVal now String not Object
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commit | commitdiff | tree |
| 2019-07-19 |
gmungoc | JAL-3371 remove unused field
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commit | commitdiff | tree |
| 2019-07-19 |
gmungoc | JAL-3371 use gui.Slider for OptAndParamPage min-max...
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commit | commitdiff | tree |
| 2019-07-18 |
gmungoc | JAL-3371 JAL-2983 add gui.Slider to handle negative...
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commit | commitdiff | tree |
| 2019-07-16 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures
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commit | commitdiff | tree |
| 2019-07-16 |
gmungoc | JAL-2983 slider 'translated' to have a non-negative...
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commit | commitdiff | tree |
| 2019-07-16 |
gmungoc | JAL-2987 tolerate null double values when formatting...
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commit | commitdiff | tree |
| 2019-07-10 |
gmungoc | Merge branch 'develop' into feature/JAL-3187linkedFeatures
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commit | commitdiff | tree |
| 2019-07-08 |
gmungoc | JAL-3187 derived peptide variants tweaks and tests
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commit | commitdiff | tree |
| 2019-07-05 |
gmungoc | JAL-3187 initial refactoring towards peptide variant...
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commit | commitdiff | tree |
| 2019-07-05 |
gmungoc | JAL-1793 apply URL decoding when saving VCF attribute...
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commit | commitdiff | tree |
| 2019-07-04 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2019-07-04 |
gmungoc | JAL-3111 help pages minor corrections
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commit | commitdiff | tree |
| 2019-06-18 |
gmungoc | JAL-3313 don't double count mapped codons
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commit | commitdiff | tree |
| 2019-06-18 |
gmungoc | JAL-3187 javadoc
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commit | commitdiff | tree |
| 2019-06-18 |
gmungoc | JAL-3304 option to export linked features also for...
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commit | commitdiff | tree |
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