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Merge branch 'develop' into improvement/JAL-3594_logos_for_jalview_test
2021-09-30 Jim ProcterMerge branch 'bug/JAL-3885_sequence_fetched_not_displaying_P...
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2021-09-29 Jim ProcterJAL-3884 squish alarming but harmless errors when uniprot...
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2021-09-29 Jim ProcterJAL-3881 split on any nonalphanumeric symbol (plus...
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2021-09-29 Jim ProcterJAL-3829 report when 3d-beacons doesn’t provide any...
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2021-09-27 Jim ProcterJAL-3746 update the example corefile for jalviewjs
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2021-09-24 Jim ProcterJAL-3821 data file for failing test
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2021-09-23 Jim ProcterMerge branch 'features/r2_11_2/JAL-3821_reinstate_patch...
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2021-09-23 Jim ProcterJAL-3821 less ambiguous base class name for EMBL and...
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2021-09-23 Jim ProcterJAL-3821 ported to refactored FlatFile parser
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2021-09-23 Jim ProcterJAL-3821 failing test
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2021-09-23 Jim ProcterJAL-3692 JAL-3861 remove extra call to .parse() so...
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2021-09-23 Jim ProcterMerge branch 'patch/JAL-3874_newJmolAndGradleDedup...
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2021-09-21 Jim ProcterJAL-3746 release notes and what’s new for 2.11.2 -...
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2021-09-21 Jim ProcterMerge branch 'doc/JAL-3746_Release_2_11_2' into develop
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2021-09-21 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-21 Jim ProcterJAL-3829 - callback finessing - leave DBRefFetcher...
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2021-09-21 Jim ProcterJAL-3829 prefix PDBe filters with PDBe to make clear...
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2021-09-21 Jim ProcterJAL-3829 alternative UX: need to select 3d-beacons...
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2021-09-21 Jim ProcterJAL-3829 ignore the fake ID generated when a PDB format...
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2021-09-20 Jim ProcterJAL-3829 updated response for P01308
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2021-09-20 Jim ProcterJAL-3829 tests need to wait for dialog to be closed...
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2021-09-20 Jim ProcterJAL-3829 TDBeacons fetcher needs a sequence with at...
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2021-09-20 Jim ProcterJAL-3829 throw the exception even if it has no message
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2021-09-20 Jim ProcterJAL-3829 ensure nulls are not wildcards when retrieving...
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2021-09-20 Jim ProcterJAL-3829 do better at detecting structure type, prompt...
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2021-09-20 Jim ProcterJAL-3829 make sure structure data type reflects actual...
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2021-09-20 Jim ProcterJAL-3829 store 3db metadata on PDBEntry so it can be...
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2021-09-20 Jim ProcterJAL-3829 allow PDBEntry with file and ID with mismatching...
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2021-09-17 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
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2021-09-17 Jim ProcterJAL-3079 JAL-3055 remember to reset font transform...
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2021-09-17 Jim ProcterJAL-1260 FileFormat entry for EMBL/GENBANK: TODO: create...
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2021-09-17 Jim ProcterJAL-3874 - replace Jmol with custom build of 14.31...
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2021-09-17 Jim ProcterJAL-2226 transfer chain annotation when calcId, label...
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2021-09-17 Jim ProcterJAL-2226 new method to search for annotation matching...
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2021-09-17 Jim ProcterJAL-3829 belt and braces check to make sure there is...
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2021-09-16 Jim ProcterMerge branch 'develop' into doc/JAL-3746_Release_2_11_2
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2021-09-16 Jim ProcterJAL-3794 X and N are counted as DNA characters, but...
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2021-09-16 Jim ProcterJAL-3794 new test for recognition of protein or DNA...
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2021-09-15 Jim ProcterMerge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverrideInfoA...
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2021-09-15 Jim ProcterJAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick
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2021-09-15 Jim ProcterJAL-3842 fix automatic what's new link for custom version...
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2021-09-15 Jim ProcterJAL-3842 2.11.1.5 what’s new, release notes, and version...
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2021-09-15 Jim ProcterJAL-3816 bump version number and cut release notes
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2021-09-15 Jim ProcterJAL-3766 cut new patch release
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2021-09-15 Jim ProcterJAL-3758 2.11.1.2 patch release notes and version bump
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2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
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2021-09-15 Jim ProcterJAL-3477 added help documentation for executable jar...
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2021-09-15 Jim ProcterJAL-3675 version update and documentation for JAL-3493...
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2021-09-15 Jim ProcterJAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...
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2021-09-15 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-14 Jim ProcterJAL-3815 default /etc/jalview_properties under utils...
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2021-09-14 Jim ProcterJAL-3829 parallel not welcome here
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2021-09-14 Jim ProcterJAL-3829 test flakiness and human flakiness
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2021-09-14 Jim ProcterJAL-3829 more info on test fail - seems to be flaky
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2021-09-14 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-14 Jim ProcterJAL-3551 - doc tweak
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2021-09-14 Jim ProcterJAL-3855 JAL-3829 better checks on PDB or mmCIF file...
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2021-09-14 Jim ProcterJAL-3829 JAL-3855 moved routing for retrieving structures...
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2021-09-14 Jim ProcterJAL-3829 JAL-3855 ignore case when detecting alphafold ID
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2021-09-14 Jim ProcterJAL-3855 detect an alphafold model and import its temperatur...
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2021-09-14 Jim ProcterJAL-3829 move mock query and responses to files
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2021-09-14 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
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2021-09-14 Jim ProcterMerge branch 'feature/JAL-2422ChimeraX' into develop
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2021-09-14 Jim ProcterJAL-3829 3d-beacons doesn’t work as a sequence source...
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2021-09-14 Jim ProcterJAL-3829 avoid sending rubbish to PDBe search api
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2021-09-14 Jim ProcterJAL-3829 some providers don’t provide model quality...
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2021-09-14 Jim ProcterJAL-3829 allow multiple URL mocks and include P01308...
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2021-09-13 Jim ProcterMerge branch 'releases/Release_2_11_2_Branch' into...
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2021-09-13 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-13 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
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2021-09-13 Jim ProcterJAL-3829 ensure unmock the FTS PDB and TDB clients...
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2021-09-13 Jim ProcterJAL-3829 minimal test of additional TDB filters - not...
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2021-09-13 Jim ProcterJAL-3829 select single best TDB structure and select...
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2021-09-12 Jim ProcterJAL-3829 JalviewJS workarounds/patches
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2021-09-12 Jim ProcterJAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to...
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2021-09-11 Jim ProcterJAL-3829 ensure tests use mocked service - proper exception...
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2021-09-11 Jim ProcterJAL-3829 patch failing tests and todo for future
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2021-09-10 Jim ProcterJAL-3829 provide both PDBe queries and 3D-Beacons queries...
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2021-09-10 Jim ProcterJAL-3829 insert title for structures from PDBe
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2021-09-10 Jim ProcterJAL-3829 update for v1.0 3d-beacons api spec
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2021-09-10 Jim ProcterJAL-3829 point at production 3d-beacons url
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2021-09-08 Jim ProcterJAL-3829 refactor and JAL-3391 JAL-2935 first stab...
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2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures...
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2021-09-08 Jim ProcterJAL-3829 JAL-3868 TODO
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2021-09-08 Jim ProcterJAL-3829 formatting
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2021-09-08 Jim ProcterJAL-3829 integration test verifying mock response is...
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2021-09-06 Jim ProcterJAL-3829 work in progress - look up additional metadata...
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2021-09-06 Jim ProcterJAL-3829 look up column in FTS data
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2021-09-06 Jim ProcterJAL-3829 mocking for PDBFTS for related query to UniprotFTS...
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2021-09-06 Jim ProcterJAL-3829 pull out structure chooser query source tests...
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2021-09-03 Jim ProcterJAL-3829 JAL-3865 test structure chooser queries to...
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2021-09-03 Jim ProcterJAL-3829 use sequence dependent constructor for structure...
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2021-09-03 Jim ProcterJAL-3829 mocking for testing 3D-Beacons FTS endpoint
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2021-09-03 Jim ProcterJAL-3863 promote non-canonical version of dbref to...
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2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initialisati...
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2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query...
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2021-09-03 Jim ProcterJAL-3863 passing test to verify a uniprot accession...
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2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implementation...
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2021-09-03 Jim ProcterJAL-3855 don’t need to query Alphafold2 repository...
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2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the StructureCh...
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