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2014-01-31	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' of https://source...	commit \| commitdiff \| tree
2014-01-30	Jim Procter	Merge branch 'Release_2_8_0b1_Branch'	commit \| commitdiff \| tree
2014-01-30	Jim Procter	JAL-1432 'whats new' and release history	commit \| commitdiff \| tree
2014-01-29	Jim Procter	JAL-957 reinstate jnetfile parameter	commit \| commitdiff \| tree
2014-01-29	Jim Procter	JAL-1432 patch broken comments in css	commit \| commitdiff \| tree
2014-01-29	Jim Procter	JAL-1432 natasha's name on applet author list	commit \| commitdiff \| tree
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	commit \| commitdiff \| tree
2014-01-29	Jim Procter	JAL-1432 AUTHORS file and updated authors properties...	commit \| commitdiff \| tree
2014-01-29	Jim Procter	JAL-1432 update dependency and licensing info	commit \| commitdiff \| tree
2014-01-29	Jim Procter	JAL-1432 bump version	commit \| commitdiff \| tree
2014-01-29	Jim Procter	Merge branch 'JAL-957_jbake' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-29	Jim Procter	JAL-1400 added explanation about signed/unsigned applet...	commit \| commitdiff \| tree
2014-01-29	Jim Procter	JAL-970 JAL-1400 fixed layout	commit \| commitdiff \| tree
2014-01-28	Jim Procter	Merge branch 'JAL-957_jbake' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 reinstate the PDBfile parameter	commit \| commitdiff \| tree
2014-01-28	Jim Procter	Merge branch 'JAL-957_jbake' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-1400 sign the jnlp for arbitrary memory	commit \| commitdiff \| tree
2014-01-28	Jim Procter	Merge branch 'JAL-957_jbake' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 JAL-1400 only sign specific jar artefacts for...	commit \| commitdiff \| tree
2014-01-28	Jim Procter	Merge branch 'JAL-957_jbake' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 neater boilerplate link to signed/unsigned...	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 shorten title for linked applets example	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 removed cruft on appletParameters page	commit \| commitdiff \| tree
2014-01-28	Jim Procter	Merge branch 'JAL-957_jbake' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 make a copy of the applet/Jmol applet jars...	commit \| commitdiff \| tree
2014-01-28	Jim Procter	Merge branch 'JAL-1400_sandboxapp' into JAL-957_jbake	commit \| commitdiff \| tree
2014-01-28	Jim Procter	Merge branch 'JAL-957_jbake' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 permissions property for example pages (jbake...	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 unsigned applet demo pages created with jbake	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 tidier source and ensure permissions is explicitly...	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 new jbake-generated example pages	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 instructions on runnning Jbake to regenerate...	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 standardise formatting for example preamble	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 standard link to signed/unsigned demo pages...	commit \| commitdiff \| tree
2014-01-28	Jim Procter	JAL-957 tidy jbake directory	commit \| commitdiff \| tree
2014-01-27	Jim Procter	Merge branch 'JAL-1430_mfa_ext' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-27	Jim Procter	JAL-1430 mfa added as a known extension for FASTA files	commit \| commitdiff \| tree
2014-01-21	jprocter	Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-21	jprocter	JAL-957 JAL-1400 unsigned applet examples	commit \| commitdiff \| tree
2014-01-21	jprocter	JAL-957 JAL-1400 use signed/unsigned applet as needed	commit \| commitdiff \| tree
2014-01-21	jprocter	JAL-957 JAL-1400 JAL-1407 signed and unsigned jalviewApplet...	commit \| commitdiff \| tree
2014-01-21	jprocter	JAL-957 tidy up formatting	commit \| commitdiff \| tree
2014-01-21	jprocter	JAL-957 javascript api documentation page	commit \| commitdiff \| tree
2014-01-21	jprocter	JAL-957 macro-ise the sidebar generation loop and add...	commit \| commitdiff \| tree
2014-01-21	jprocter	JAL-957 only include content body for 'normal' pages...	commit \| commitdiff \| tree
2014-01-21	jprocter	JAL-957 fix layout of pages	commit \| commitdiff \| tree
2014-01-18	jprocter	formatting	commit \| commitdiff \| tree
2014-01-18	jprocter	JAL-1400 numeric version numbers only for minimum jre...	commit \| commitdiff \| tree
2014-01-17	jprocter	Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-17	jprocter	JAL-1400 still fixing JmolApplet manifest issue	commit \| commitdiff \| tree
2014-01-17	jprocter	Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-17	jprocter	JAL-1400 tweaking to ensure JmolApplet build correctly	commit \| commitdiff \| tree
2014-01-17	jprocter	Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-17	jprocter	formatting	commit \| commitdiff \| tree
2014-01-17	jprocter	JAL-1400 default JalviewLite build is signed applet...	commit \| commitdiff \| tree
2014-01-14	Jim Procter	Merge branch 'WIP_fix_JAL-1423' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-14	Jim Procter	JAL-1400 specify minimum 1.6 JRE	commit \| commitdiff \| tree
2014-01-13	Jim Procter	Merge branch 'JAL-1422_srs' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-13	Jim Procter	JAL-1422 update any existing configuration to replace...	commit \| commitdiff \| tree
2014-01-13	Jim Procter	JAL-1422 change default link to EMBL-EBI Search	commit \| commitdiff \| tree
2014-01-13	Jim Procter	JAL-1422 remove SRS and expasy links and replace with...	commit \| commitdiff \| tree
2014-01-07	Jim Procter	Merge branch 'fix_JAL-1423' into Release_2_8_Branch	commit \| commitdiff \| tree
2014-01-07	Jim Procter	JAL-1423 - console error reporting and graceful handling...	commit \| commitdiff \| tree
2013-11-26	Jim Procter	Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-11-26	Jim Procter	JAL-1400 update manifest in the JmolApplet jar	commit \| commitdiff \| tree
2013-11-26	Jim Procter	Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-11-26	Jim Procter	JAL-1400 disable 'Permissions' in manifest to see if...	commit \| commitdiff \| tree
2013-11-26	Jim Procter	Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-11-26	Jim Procter	sandbox permissions	commit \| commitdiff \| tree
2013-11-26	Jim Procter	new required parameter for deploying the applet	commit \| commitdiff \| tree
2013-11-26	Jim Procter	Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-11-26	Jim Procter	JAL-1400 add codebase and caller allowable codebase	commit \| commitdiff \| tree
2013-11-25	Jim Procter	Merge branch 'JAL-1139_proguard' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-11-25	Jim Procter	JAL-1139 specified SHA1WithRSA for sig algorithm and...	commit \| commitdiff \| tree
2013-11-25	Jim Procter	adivce from http://ant.apache.org/manual/Tasks/signjar...	commit \| commitdiff \| tree
2013-11-25	Jim Procter	Merge branch 'JAL-1139_proguard' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-11-25	Jim Procter	JAL-1139 need to explicitly specify SHA1 for java 6...	commit \| commitdiff \| tree
2013-11-25	Jim Procter	Merge branch 'JAL-1139_proguard' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-11-25	Jim Procter	JAL-1139 supress dependency warnings from proguard	commit \| commitdiff \| tree
2013-11-25	Jim Procter	Merge branch 'JAL-1139_proguard' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-11-25	Jim Procter	JAL-1139 latest version of proguard needed for Java...	commit \| commitdiff \| tree
2013-11-07	Jim Procter	Merge branch 'JAL-1286' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-11-07	Jim Procter	JAL-1286 additional tests to ensure that non-GZ files...	commit \| commitdiff \| tree
2013-11-07	Jim Procter	JAL-1286 check if local file ends with .gz and opens...	commit \| commitdiff \| tree
2013-11-07	Jim Procter	JAL-1286 test input of gzip stream from local file	commit \| commitdiff \| tree
2013-11-05	Jim Procter	JAL-1400 found a fix for the sandbox exception - need...	commit \| commitdiff \| tree
2013-11-05	Jim Procter	experiment with reinstating the sandbox permissions	commit \| commitdiff \| tree
2013-11-05	Jim Procter	JAL-1400 try putting explicit domain for jalviewLite...	commit \| commitdiff \| tree
2013-11-05	Jim Procter	JAL-1400 Always create indices for jar before signing	commit \| commitdiff \| tree
2013-11-05	Jim Procter	JAL-1400 sign everything !	commit \| commitdiff \| tree
2013-11-05	Jim Procter	JAL-1400 explicit security settings for applet	commit \| commitdiff \| tree
2013-11-05	Jim Procter	JAL-1400 explicit security permissions for Desktop	commit \| commitdiff \| tree
2013-10-11	Jim Procter	Merge branch 'JAL-1164_disorderforselection' into Release_2_...	commit \| commitdiff \| tree
2013-10-11	Jim Procter	JAL-1164 regression on JAL-1292 use bitset to mark...	commit \| commitdiff \| tree
2013-10-11	Jim Procter	JAL-1164 scope bySequence analysis methods to start...	commit \| commitdiff \| tree
2013-10-11	Jim Procter	JAL-1114 javadoc	commit \| commitdiff \| tree
2013-10-11	Jim Procter	JAL-1114 promote start/end attributes to gettable fields...	commit \| commitdiff \| tree
2013-10-11	Jim Procter	JAL-1114 API javadoc	commit \| commitdiff \| tree
2013-10-11	Jim Procter	JAL-1164 only predict on currently selected sequences...	commit \| commitdiff \| tree
2013-10-11	Jim Procter	JAL-1385 expose core view model methods in interface	commit \| commitdiff \| tree
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