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jalview.git
2023-11-01 Mateusz WarownyJAL-4313 Clamp start and end ranges to array size bug/JAL-4313-make-visible-annot-fix commit | commitdiff | tree | snapshot
2023-10-31 Mateusz WarownyJAL-4313 Test and patch annots trimming commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Change default trim end to (length - 1) commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Test makeVisibleAnnotations commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Create Annotation tests commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Patch AnnotationsMatcher to match nulls commit | commitdiff | tree | snapshot
2023-10-30 Mateusz WarownyJAL-4313 Create utilities to test annotations commit | commitdiff | tree | snapshot
2023-09-14 Mateusz WarownyJAL-4241 Flter empty columns from annotation service... mmw/bug/JAL-4241-annotation-alignment-fix-slivka commit | commitdiff | tree | snapshot
2023-09-14 Mateusz WarownyJAL-4241 Add SequenceI.setSequence(char[]) method commit | commitdiff | tree | snapshot
2023-09-14 Mateusz WarownyJAL-4241 add SeqsetUtils.filterSequence function commit | commitdiff | tree | snapshot
2023-09-12 Mateusz WarownyJAL-4241 Fix non-standard residues replacement. commit | commitdiff | tree | snapshot
2023-09-11 Mateusz WarownyMerge branch 'mmw/bug/JAL-4241-annotation-alignment... commit | commitdiff | tree | snapshot
2023-09-11 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into... commit | commitdiff | tree | snapshot
2023-09-11 Mateusz WarownyMerge branch 'improvement/JAL-4245-return-null-from... commit | commitdiff | tree | snapshot
2023-09-08 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into... commit | commitdiff | tree | snapshot
2023-09-08 Mateusz WarownyJAL-4199 Set all setup methods to alwaysRun mmw/JAL-4199-web-services-testing commit | commitdiff | tree | snapshot
2023-09-08 Mateusz WarownyJAL-4199 Add tests to the "Functional" group commit | commitdiff | tree | snapshot
2023-08-04 Mateusz WarownyJAL-4241 Test sequences prepared for annotation job commit | commitdiff | tree | snapshot
2023-07-31 Mateusz WarownyJAL-4241 Fix annotation and feature alignment with... commit | commitdiff | tree | snapshot
2023-07-28 Mateusz WarownyJAL-4241 Create sequence mapping before adjusting annot... commit | commitdiff | tree | snapshot
2023-07-26 Mateusz WarownyJAL-4245 Test getRootDataset method improvement/JAL-4245-return-null-from-getRootDataset commit | commitdiff | tree | snapshot
2023-07-26 Mateusz WarownyJAL-4245 Return null from getRootDataset if no dataset commit | commitdiff | tree | snapshot
2023-07-19 Mateusz WarownyJAL-4199 Add tests to the "Functional" group commit | commitdiff | tree | snapshot
2023-07-18 Mateusz WarownyMerge branch 'patch/JAL-4232-disable-unavailable-servic... commit | commitdiff | tree | snapshot
2023-07-18 Mateusz WarownyMerge branch 'mmw/JAL-4199-task-execution-update' into... commit | commitdiff | tree | snapshot
2023-07-18 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into... commit | commitdiff | tree | snapshot
2023-07-17 Mateusz WarownyJAL-4232 Disable menu items for RNA services for proteins. patch/JAL-4232-disable-unavailable-services commit | commitdiff | tree | snapshot
2023-07-14 Mateusz WarownyMerge branch 'feature/JAL-3954-ebi-phmmer' into mmw... mmw/JAL-4199-task-execution-update commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Fix cancel button not appearing on progress bar commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Restore deletable test when removing workers commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Remove viewport reference from AnnotationTask commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Fix slivka client to parse feature fileters commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 remove viewport references from AlignmentTask commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Fix interactive jobs not being stopped commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Organise AlignCalcWorkerAdapter imports commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Implement toString in BaseTask commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Organise annotation task imports and fields commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Set initial delay of task executor to 0 commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Remove commented out code commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Perform null check for annotation sequenceRef commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Patch task execution in action tests commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Remove utility methods moved to other classes... commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyImplement getRootDatasetSequence for SequenceI commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyImplement getLastGraphGroup in for AnnotatedCollectionI commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Schedule tasks for execution from MenuManager commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Tidy up imports commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Update gui handler for annotation tasks commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Implement AlignCalcWorker adapter for annot... commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Fix method name typo commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Make all TaskEventListener methods default commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Remove taskRestarted from task events commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Allow multiple listeners in TaskEventSupport commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Change actions to be task factories commit | commitdiff | tree | snapshot
2023-07-12 Mateusz WarownyJAL-4199 Replace AbstractPollingTask with BaseTask commit | commitdiff | tree | snapshot
2023-07-04 James ProcterMerge branch 'mmw/Release_2_12_ws_merge' into developme... commit | commitdiff | tree | snapshot
2023-06-22 Mateusz WarownyJAL-4199 Introduce AlignmentAction tests commit | commitdiff | tree | snapshot
2023-06-22 Mateusz WarownyJAL-4199 Initialize jobs and tasks with status CREATED commit | commitdiff | tree | snapshot
2023-06-19 Mateusz WarownyJAL-4199 Test basic service parameter construction commit | commitdiff | tree | snapshot
2023-06-14 Mateusz WarownyJAL-4199 Test URL settings and basic service discovery commit | commitdiff | tree | snapshot
2023-06-14 Mateusz WarownyJAL-4199 Update slivka client commit | commitdiff | tree | snapshot
2023-06-02 Mateusz WarownyJAL-3954 Do not retrieve alignment for failed jobs feature/JAL-3954-ebi-phmmer commit | commitdiff | tree | snapshot
2023-06-02 Mateusz WarownyJAL-3954 Report error log when job fails commit | commitdiff | tree | snapshot
2023-06-02 Mateusz WarownyJAL-3954 Add query sequence aligned to consensus to... commit | commitdiff | tree | snapshot
2023-06-02 Mateusz WarownyJAL-3954 reuse spinner dialog to show search task status commit | commitdiff | tree | snapshot
2023-05-30 Mateusz WarownyJAL-3954 create primitive gui handler for search service commit | commitdiff | tree | snapshot
2023-05-16 Mateusz WarownyJAL-3954 Implement phmmer action and task as alignment... commit | commitdiff | tree | snapshot
2023-05-16 Mateusz WarownyJAL-3954 Log events TaskEventListener.NULL_LISTENER commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Create fallback for handling unknown actions commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Register AlignFrame as web service change... commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Implement job dispatcher service discoverer commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Implement NullAction and NullTask for testing... commit | commitdiff | tree | snapshot
2023-05-10 Mateusz WarownyJAL-3954 Fix typo in error message commit | commitdiff | tree | snapshot
2023-05-08 Mateusz WarownyJAL-3954 Update hmmer client lib, testEndpoint added commit | commitdiff | tree | snapshot
2023-05-08 Mateusz WarownyJAL-3954 Implement proxy ws client for phmmer commit | commitdiff | tree | snapshot
2023-05-08 Mateusz WarownyJAL-3954 Add client libraries for phmmer and j2s http commit | commitdiff | tree | snapshot
2023-05-08 Mateusz WarownyJAL-3954 Create getters for Credentials record commit | commitdiff | tree | snapshot
2023-05-08 Mateusz WarownyJAL-3954 Add value parsers for double, int and bool... commit | commitdiff | tree | snapshot
2023-05-08 Mateusz WarownyJAL-3954 Create ParamDatastore builder for phmmer commit | commitdiff | tree | snapshot
2023-04-24 Mateusz WarownyJAL-4155 Replace unsafe casting to AlignmentPanel with... commit | commitdiff | tree | snapshot
2023-04-24 James ProcterJAL-4155 Viewport holds a reference to its AlignmentVie... commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyJAL-4154 Remove not-bamboo flag from testGetVisibleWidth commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyJAL-4154 Update AlignmentPanelTest to use new forArch... commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyJAL-4154 Add Platform.forArch method. commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyMerge branch 'JAL-4152-typed-singleton-provider' into... commit | commitdiff | tree | snapshot
2023-03-28 Mateusz WarownyMerge branch 'development/Release_2_12_Branch' into... commit | commitdiff | tree | snapshot
2023-03-24 Mateusz WarownyJAL-4152 Remove redundant casts from getInstance usages. JAL-4152-typed-singleton-provider commit | commitdiff | tree | snapshot
2023-03-22 Mateusz WarownyJAL-4152 Make return type of getInstance a generic... commit | commitdiff | tree | snapshot
2023-03-17 Mateusz WarownyJAL-4146 Fix SeqCanvasTest setup commit | commitdiff | tree | snapshot
2023-03-15 Mateusz WarownyJAL-4146 Change occurrences of <br/> to <br> commit | commitdiff | tree | snapshot
2023-03-14 Mateusz WarownyJAL-4146 Patch parseColourString test to expect null... commit | commitdiff | tree | snapshot
2023-03-01 Mateusz WarownyJAL-4136 Replace uses of isBlank with isEmpty commit | commitdiff | tree | snapshot
2023-02-24 Mateusz WarownyJAL-4135 replace stream.toString(Charset) calls with... commit | commitdiff | tree | snapshot
2023-02-22 Mateusz WarownyJAL-4130 Replace Collection#forEach call with for loop commit | commitdiff | tree | snapshot
2023-02-22 Mateusz WarownyJAL-4130 Avoid using thenComparing of the Comparator... commit | commitdiff | tree | snapshot
2023-02-17 Mateusz WarownyJAL-4131 Replace usages of requireNonNullElse commit | commitdiff | tree | snapshot
2023-02-16 Mateusz WarownyJAL-4130 Workaround the j2s issue with final variables... commit | commitdiff | tree | snapshot
2023-02-06 Mateusz WarownyJAL-3878 Change Cache.log calls to Console commit | commitdiff | tree | snapshot
2023-02-06 Mateusz WarownyMerge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterMerge branch 'develop' into development/Release_2_12_Br... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api... commit | commitdiff | tree | snapshot
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