jalview.git
2022-02-04 Mateusz WarownyJAL-3878 Fix typo in slivka host urls variable name. mmw/JAL-3878-ws-overhaul
2022-01-19 Mateusz WarownyJAL-3878 Move listeners list from the WebServiceDiscove...
2021-12-23 Mateusz WarownyJAL-3878 Use AlignViewport interface instead of concret...
2021-12-01 Mateusz WarownyJAL-3878 Use annotations from the representative sequen...
2021-11-25 Mateusz WarownyJAL-3878 Add jpred operation and worker to the services.
2021-11-24 Mateusz WarownyJAL-3878 Make openEditsParamsDialog an interface static...
2021-11-23 Mateusz WarownyJAL-3878 Add annotation operation and worker to the...
2021-11-23 Mateusz WarownyJAL-3878 Handle nulls when filtering annotation workers...
2021-11-23 Mateusz WarownyJAL-3878 Move common poll method to upper class Abstrac...
2021-11-23 Mateusz WarownyJAL-3878 Add methods to get and remove workers by their...
2021-11-23 Mateusz WarownyJAL-3878 Add getCalcName to AlignCalcWorkerI.
2021-11-22 Mateusz WarownyJAL-3878 Add multiple sequence operation.
2021-11-22 Mateusz WarownyJAL-3878 Create abstract workers and their utility...
2021-11-22 Mateusz WarownyJAL-3878 Create pollable task and executor it can be...
2021-11-18 Mateusz WarownyJAL-3878 Add ws menu builder and attach to the align...
2021-11-18 Mateusz WarownyJAL-3878 Add slivka's implementations of web service...
2021-11-18 Mateusz WarownyJAL-3878 Create backbone for new web services
2021-11-18 Mateusz WarownyJAL-3066 Remove redundant throws declaration from Slivk...
2021-11-16 Mateusz WarownyMerge branch 'JAL-3866_RNAalifold-slivka-client' into...
2021-11-16 Mateusz WarownyMerge branch 'alpha/JAL-3899_deuniquify_refactor' into...
2021-10-07 Mateusz WarownyJAL-3899 Replace prints with logger messages. alpha/JAL-3899_deuniquify_refactor
2021-10-06 Mateusz WarownyJAL-3899 Update usages of uniquify and deuniquify.
2021-10-06 Mateusz WarownyJAL-3899 Refactor sequence de/uniquification.
2021-09-02 Mateusz WarownyAdd RNAalifold service instance to slivka web services. JAL-3866_RNAalifold-slivka-client
2021-07-29 Mateusz WarownyMerge branch 'improvement/JAL-3848_slivka_0.8' into...
2021-07-27 Mateusz WarownyMerge branch 'bug/JAL-3807_jpred-with-slivka' into...
2021-07-27 Mateusz WarownyMerge commit '0b438477b16470202bddfecb54e0587036b37202...
2021-07-27 Mateusz WarownyJAL-3066 Fix NullPointerException thrown when showing...
2021-07-25 Jim ProcterJAL-3854 patched SeqSeqUtils.deUniquify to not use... improvement/JAL-3848_slivka_0.8
2021-07-25 Jim ProcterJAL-2994 disable tests for FileUtils path search method...
2021-07-25 Jim ProcterJAL-3848 slivka preferences in javascript
2021-07-25 Jim ProcterJAL-3848 reinstate Fetch DB References submenu
2021-07-25 Jim ProcterJAL-3848 update jalview core with slivka classes, examp...
2021-07-25 Jim ProcterJAL-3848 add compbio and jalview to direct connection...
2021-07-25 Jim ProcterJAL-3853 - tweak test again - since failed a few commit...
2021-07-25 Jim ProcterJAL-3848 update swingJS runtime and transpiler to 3.3.1
2021-07-25 Jim ProcterMerge branch 'improvement/JAL-3848_slivka_0.8' of https...
2021-07-23 Mateusz WarownyJAL-3848 Update slivka client javajs library.
2021-07-22 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
2021-07-22 Jim ProcterJAL-3848 enable slivka services dialog in JalviewJS
2021-07-22 Jim ProcterJAL-3853 JAL-1870 toggle to enable/disable posterior...
2021-07-22 Jim ProcterJAL-3853 JAL-1870 patch tests for annotation colour...
2021-07-22 Jim ProcterJAL-1950 patch groovy bootstrap for importing hmmer3...
2021-07-22 Jim ProcterJAL-3853 patch sequence annotation report code and...
2021-07-22 Jim ProcterJAL-3848 ensure annotation from a service gets a calcId...
2021-07-22 Jim ProcterJAL-3848 don’t include sequence limits in sequence...
2021-07-22 Jim ProcterJAL-3848 - actually test the Slivka and JABAWS disorder...
2021-07-21 Mateusz WarownyJAL-3848 print exception for failed align jobs
2021-07-21 Mateusz WarownyJAL-3848 add latest slivka-client fixes.
2021-07-09 Mateusz WarownyMerge branch 'jpred-fix' into bug/JAL-3807_jpred-with... bug/JAL-3807_jpred-with-slivka
2021-07-09 Mateusz WarownyJAL-3807 Fix SlivkaWSInstance not fetching alignments.
2021-07-09 Mateusz WarownyMerge branch 'bug/JAL-3849_aacon-parameters' into impro...
2021-07-09 Mateusz WarownyJAL-3690 Remove references to old AlignCalcManager. bug/JAL-3849_aacon-parameters
2021-07-08 Mateusz WarownyJAL-3848 SlivkaParamSet: reformat code and add service...
2021-07-08 Mateusz WarownyJAL-3848 Update slivka client library.
2021-07-08 Mateusz WarownyJAL-3849 Remove join() which blocked the ui.
2021-02-22 Mateusz WarownyJAL-3807 - Add single sequence capabilities to jws2...
2021-02-22 Mateusz WarownyJAL-3807 - Move new JPred client to the jws2 package.
2021-02-22 Mateusz WarownyJAL-3807 - Re-implement results processing.
2021-02-22 MateuszJAL-3807 JPred can now successfully submit and track...
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3809_ws_params_dialog_fix' into...
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3810_annotation_ws_stopping_abrup... bug/JAL-3809_ws_params_dialog_fix
2021-02-22 Mateusz WarownyJAL-3809 - Fixed param edit dialog for jalviewjs.
2021-02-22 Mateusz WarownyMerge branch 'feature/JAL-3690_callback-based-web-servi...
2021-02-22 MateuszMerge branch 'feature/JAL-3690_callback-based-web-servi...
2021-02-05 Mateusz WarownyJAL-3810 - Add trace method to javascript implementatio... bug/JAL-3810_annotation_ws_stopping_abruptly
2021-02-05 Mateusz WarownyJAL-3810 - Replace log.trace() calls with log.debug()
2021-01-27 MateuszJAL-3690 Introduce AlignCalcManager2 tests. feature/JAL-3690_callback-based-web-services
2021-01-22 MateuszMerge branch 'Jalview-JS/develop' into feature/JAL...
2021-01-22 MateuszJAL-3690 AlignCalcManager - add full support for onesho...
2021-01-22 MateuszJAL-3690 AACon ws menu entry fix.
2021-01-22 MateuszJAL-3690 Allow unregistered workers to be run with...
2021-01-22 MateuszJAL-3690 Fix typo in enum name in slivka client.
2021-01-22 MateuszJAL-3690 Fixed slivka wsmenu categories.
2021-01-18 MateuszMerge remote-tracking branch 'origin/merge/Jalview...
2021-01-12 Ben SoaresJAL-3789 Use j2s.config.altfileproperty in .j2s for... Jalview-JS/develop
2021-01-12 Ben SoaresJAL-3789 New swingjs for Java2Script 3.2.10 with j2s...
2020-12-18 Jim ProcterJAL-3690 recoded AWSThread to use javax.swing.Timer... merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services
2020-12-17 Jim ProcterJAL-3690 patch out use of java.streams/spliterator...
2020-12-15 Jim ProcterJAL-3690 tweak J2S direct DB access registration for...
2020-12-15 Jim ProcterJAL-3690 direct access to slivka, compbio, jalview...
2020-12-15 Jim ProcterJAL-3690 patch out need for java.time in j2s (see https...
2020-12-15 Jim ProcterJAL-3690 patch out spinning animation for web service...
2020-12-15 Jim ProcterJAL-3690 disable proxy server for JalviewJS
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop_j2s_v3_2_9_j11' into...
2020-12-11 MateuszJAL-3690 Let's enable web services (seriously this...
2020-12-10 Jim ProcterJAL-3223 - update swingjs to 3.2.9-j11 Jalview-JS/develop_j2s_v3_2_9_j11
2020-11-27 Mateusz WaronwyJAL-3690 List.copyOf() workaround
2020-11-13 Mateusz WaronwyJAL-3690 separate startup and poll code in SeqAnnotatio...
2020-11-12 Mateusz WaronwyJAL-3690 - fixed state inconsistency when restarting...
2020-11-11 Mateusz WaronwyJAL-3690 partially reworked AlignCalcManager
2020-10-26 Mateusz WaronwyJAL-3690 - introduce shutdown method that cleans up...
2020-10-21 Mateusz WaronwyJAL-3690 Documentation for AlignCalcListener
2020-10-21 Mateusz WaronwyJAL-3690 Catch and notify about worker cancellation...
2020-10-21 Mateusz WaronwyJAL-3690 Fix concurrent modification exception when...
2020-10-21 Mateusz WaronwyJAL-3690 Documentation for AlignCalcManagerI2
2020-10-21 Mateusz WarownyJAL - 3690 AlignCalc rebuilt - FutureTask-based manager
2020-09-25 Ben SoaresJAL-3577 Removed default JALVIEW_VERSION from gradle...
2020-09-24 Ben SoaresJAL-3577 Quick fix adding quotation marks for findPrope...
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