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jalview.git
2019-03-18 Ben SoaresJAL-3130 removing no longer needed JRE (going to use... task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS commit | commitdiff | tree | snapshot
2019-03-18 Ben SoaresJAL-3130 Removing accidentally committed tmp dir commit | commitdiff | tree | snapshot
2019-03-18 Ben SoaresJAL-3130 Some automatically fixed deprecated calls... commit | commitdiff | tree | snapshot
2019-03-07 Ben SoaresJAL-3130 deprecation change preparation commit | commitdiff | tree | snapshot
2018-12-18 Ben SoaresJAL-3130 added a javac helper script too (like the... commit | commitdiff | tree | snapshot
2018-12-17 Ben SoaresJAL-3130 java bash wrapper to choose which java to... commit | commitdiff | tree | snapshot
2018-12-17 Ben SoaresJAL-3130 Some fixes to ant build xml, and the modules... commit | commitdiff | tree | snapshot
2018-12-14 Ben SoaresJAL-3130 single class testing on CLI with ant [ -Dclass... commit | commitdiff | tree | snapshot
2018-12-13 Ben SoaresJAL-3130 Fixing a few more tests that pass on a Mac... commit | commitdiff | tree | snapshot
2018-12-13 Ben SoaresJAL-3130 Use non-deprecated check for Mac CMD key press commit | commitdiff | tree | snapshot
2018-12-13 Ben SoaresJAL-3130 Attempting to fix 8 tests that pass on a Mac... commit | commitdiff | tree | snapshot
2018-12-11 Ben SoaresJAL-3130 Turns out Quit/About/Preferences handlers... commit | commitdiff | tree | snapshot
2018-12-10 Ben SoaresJAL-3130 another tweak for bamboo to add the JDK jmods... commit | commitdiff | tree | snapshot
2018-12-10 Ben SoaresJAL-3130 build.xml tweaks for clover-3.4.1 commit | commitdiff | tree | snapshot
2018-12-10 Ben SoaresJAL-3130 tweaked build.xml to do java 11 bytecode compi... commit | commitdiff | tree | snapshot
2018-12-07 Ben SoaresJAL-3130 Some re-reorganisation for build process commit | commitdiff | tree | snapshot
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... commit | commitdiff | tree | snapshot
2018-12-03 Ben SoaresJAL-3130 de-multi-release-jar.sh Script to make multi... commit | commitdiff | tree | snapshot
2018-12-03 Ben SoaresJAL-3130 Added flagged runtime 'Reflection' check on... commit | commitdiff | tree | snapshot
2018-11-30 Ben SoaresJAL-3130 refactored a lot of this. See the JAVA-11... commit | commitdiff | tree | snapshot
2018-11-19 Ben SoaresJAL-1988 JAL-3130 New jlinked JRE in jalview_java2... commit | commitdiff | tree | snapshot
2018-11-09 Ben SoaresJAL-1988 This fixes the Quit response when user cancels... commit | commitdiff | tree | snapshot
2018-11-08 Ben SoaresJAL-1988 JAL-3130 Now we're in Java 11 land, using... commit | commitdiff | tree | snapshot
2018-11-08 Ben SoaresJAL-1988 tidying, plus don't add Preferences to Tools... commit | commitdiff | tree | snapshot
2018-11-08 Ben SoaresJAL-1988 JAVA 11 enabled version with Quit, Preferences... commit | commitdiff | tree | snapshot
2018-11-05 Ben SoaresJAL-1988 Investigating... commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 tweaks to help text for filters commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'bug/JAL-3120restoreFeatureColour' into... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3120 preserve plain colour value when changing... commit | commitdiff | tree | snapshot
2018-09-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'cherrypick/JAL-2808_notabs' into develop commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterJAL-2808 JAL-3026 deleted all commented out tab code... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and... commit | commitdiff | tree | snapshot
2018-09-18 Jim ProcterJAL-2865 release notes commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 gmungocJAL-1551 reinstated Save actions commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 increased TEST_TIMEOUT to 9000ms - needed... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'releases/Release_2_11_Branch' into merge... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2018-09-09 Jim ProcterJAL-3091 changed release date to 10th September - tweak... releases/Release_2_10_5_Branch Release_2_10_5 commit | commitdiff | tree | snapshot
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3106 use .jvp as default commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3091 code committed in error (failed patch for... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3091 release notes for JAL-3104 commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3105 reallocate quality and consensus annotation... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-2854 compute visible annotation panel height and... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3065 don’t quote class path args for Runtime.exec... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 update whats new! commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 update Java 10 known issues/workarounds in... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 known defect in whats new for Java 10 issues... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 add Ben Soares to authors list and switch... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 release notes for updated memory settings commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 release notes commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3101 increase default heap size in IA and JNLP... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-2988 update InstallAnywhere install dependencies... patch/VAqua_saveload_update_JAL-2988 commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3076ensemblGeneId' into develop commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 release date set for Thursday 6th September commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings commit | commitdiff | tree | snapshot
2018-09-04 Jim ProcterJAL-3091 JAL-2988 release notes re Java 10 and OSX commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988... commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source... commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3091 -Dnosign to disable jar signing phase of build commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3091 -Dnosign to disable jar signing phase of build commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3091 release notes and whats new ! commit | commitdiff | tree | snapshot
2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_... commit | commitdiff | tree | snapshot
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of... commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3065 release notes commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception' into... commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3076 clarify javadoc handling single sequence respo... bug/JAL-3076ensemblGeneId commit | commitdiff | tree | snapshot
2018-09-03 Jim ProcterJAL-3087 release notes commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterJAL-3095 account for sequence start when highlighting... commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterJAL-3053 JAL-3061 JAL-3095 release notes commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno... commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source... commit | commitdiff | tree | snapshot
2018-08-31 Jim ProcterJAL-3095 release notes commit | commitdiff | tree | snapshot
2018-08-31 Jim Procterjava doc and fix for JAL-3095 - region of trimmed RNA... commit | commitdiff | tree | snapshot
2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup commit | commitdiff | tree | snapshot
2018-08-30 Jim ProcterJAL-3092 release notes commit | commitdiff | tree | snapshot
2018-08-30 Jim ProcterJAL-3092 make sure base pair counter is always moved... commit | commitdiff | tree | snapshot
2018-08-29 Jim ProcterJAL-3091 release notes for JAL-3003 JAL-3059 commit | commitdiff | tree | snapshot
2018-08-28 Jim ProcterJAL-3003 different coloured borders in demo annotation... commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-3059 use correct border colour for groups commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics... commit | commitdiff | tree | snapshot
2018-08-28 Jim ProcterJAL-247 release notes commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm commit | commitdiff | tree | snapshot
2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw... commit | commitdiff | tree | snapshot
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