sources/jnet/Makefile

   1 NNOBJECTS=pssma1.o pssma2.o pssmb1.o pssmb2.o hmm1.o hmm2.o psisol25.o hmmsol25.o psisol0.o psisol5.o hmmsol0.o hmmsol5.o
   2 OBJECTS=$(NNOBJECTS) jnet.o ./cmdline/cmdline.o
   3
   4 CC = gcc
   5
   6 # Normal compile
   7 CFLAGS = -Wall -pedantic -O3 -ffast-math -fomit-frame-pointer
   8         #-O0 -ggdb3
   9 LDFLAGS = -lm -Icmdline
  10         # -pg -lefence
  11
  12 all: jnet
  13
  14 ./cmdline/cmdline.o: ./cmdline/cmdline.ggo
  15         $(MAKE) -C cmdline
  16
  17 jnet.c: ./cmdline/cmdline.o
  18
  19 jnet: $(OBJECTS)
  20         $(CC) $(CFLAGS) $(OBJECTS) -o jnet $(LDFLAGS)
  21
  22 .PHONY: clean veryclean test
  23
  24 clean:
  25         rm -f $(OBJECTS) jnet test.jnet
  26
  27 veryclean: clean
  28         $(MAKE) -C cmdline clean
  29
  30 test: test.jnet
  31
  32 # Test by running prediction on a single known sequence
  33 # and check for any difference between the prediction and the known result
  34 test.jnet: jnet
  35         @echo "Test 1: d1b65a_"
  36         ./jnet --concise --hmm test/d1b65a_.hmm --pssm test/d1b65a_.pssm --test 2> /dev/null > test.jnet
  37         diff -q test/d1b65a_.jnet test.jnet
  38         rm -f test.jnet
  39         @echo "Test passed! Jnet binary is valid!"