sources/multicoil/scscore.h

   1 /*  Bonnie Berger, David Wilson and Theodore Tonchev 1992  */
   2 /*      C Header File.  modified Ethan Wolf 1995     */
   3 /*  Defines the names of functions used in scscore.c.     */
   4
   5 #ifndef __scscore_h__
   6 #define __scscore_h__ 1
   7
   8 #include "scconst.h"
   9
  10
  11 /* Procedure Prototypes */
  12
  13 double getdlog(double num);
  14
  15 int calcgprobs(long freqs[AANUM], long totals,
  16               double probs[NUM_RES_TYPE]);
  17
  18 int calcgprobp(long freqp[AANUM][AANUM][POSNUM],
  19               long totalp[POSNUM],
  20               double probp[NUM_RES_TYPE][NUM_RES_TYPE][POSNUM]);
  21
  22 int calcpprobs(long freqs[AANUM][POSNUM], long totals[POSNUM],
  23               double probs[NUM_RES_TYPE][POSNUM],
  24                int ProlineFreeWin);
  25
  26
  27 int calcpprobp(long freqp[AANUM][AANUM][POSNUM][POSNUM],
  28               long totalp[POSNUM][POSNUM],
  29               double probs[NUM_RES_TYPE][POSNUM],
  30               double probp[NUM_RES_TYPE][NUM_RES_TYPE][POSNUM][POSNUM],
  31               int ProlineFreeWin);
  32
  33
  34 int scorestock(char seq[MAXSEQLEN], int seqlen,
  35                double scores[MAXSEQLEN][POSNUM],
  36                char offsets[MAXSEQLEN],
  37                double *maxscore, int ProlineFreeWin, int stockstock);
  38
  39 int scoreseq(char seq[MAXSEQLEN], int seqlen,
  40              double scores[MAXSEQLEN],
  41              char offsets[MAXSEQLEN],
  42              double *maxscore);
  43
  44
  45 int scseqadj(char lib[MAXFUNCTNUM],
  46              char seq[MAXSEQLEN], int seqlen,
  47              double gscores[MAXSEQLEN][POSNUM],
  48              char goffsets[MAXSEQLEN],
  49              double *maxscore, int mode, int differentiator);
  50
  51 #endif   /* __scscore_h__ */
  52
  53 /*       End of Code       */