sources/pairwise/docs/html/pairwise_8h-source.html

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   8 <h1>pairwise.h</h1><a href="pairwise_8h.html">Go to the documentation of this file.</a><div class="fragment"><pre>00001 <span class="preprocessor">#include &lt;stdlib.h&gt;</span>
   9 00002
  10 <a name="l00003"></a><a class="code" href="structfasta.html">00003</a> <span class="keyword">struct </span><a class="code" href="structfasta.html">fasta</a> {
  11 <a name="l00004"></a><a class="code" href="structfasta.html#o0">00004</a>         <span class="keywordtype">char</span> *<a class="code" href="structfasta.html#o0">id</a>;
  12 <a name="l00005"></a><a class="code" href="structfasta.html#o1">00005</a>         <span class="keywordtype">char</span> *<a class="code" href="structfasta.html#o1">seq</a>;
  13 <a name="l00006"></a><a class="code" href="structfasta.html#o2">00006</a>         <span class="keywordtype">int</span> <a class="code" href="structfasta.html#o2">start</a>;
  14 <a name="l00007"></a><a class="code" href="structfasta.html#o3">00007</a>         <span class="keywordtype">int</span> <a class="code" href="structfasta.html#o3">end</a>;
  15 <a name="l00008"></a><a class="code" href="structfasta.html#o4">00008</a>         <span class="keywordtype">int</span> <a class="code" href="structfasta.html#o4">numres</a>;
  16 00009 };
  17 00010
  18 00011 <span class="keywordtype">void</span> <a class="code" href="pairwise_8c.html#a6">fatal_error</a> (<span class="keywordtype">char</span> *message);
  19 00012 FILE * <a class="code" href="pairwise_8c.html#a8">xfopen</a> (<span class="keyword">const</span> <span class="keywordtype">char</span> *path, <span class="keyword">const</span> <span class="keywordtype">char</span> *mode);
  20 00013 <span class="keywordtype">void</span> * <a class="code" href="pairwise_8c.html#a9">xmalloc</a> (size_t size);
  21 00014 <span class="keywordtype">void</span> * <a class="code" href="pairwise_8c.html#a10">xrealloc</a> (<span class="keywordtype">void</span> *ptr, size_t size);
  22 00015 <span class="keywordtype">int</span> <a class="code" href="pairwise_8c.html#a11">diff</a> (<span class="keywordtype">char</span> a, <span class="keywordtype">char</span> b);
  23 00016 <span class="keywordtype">float</span> <a class="code" href="pairwise_8c.html#a12">pairwise</a> (<span class="keyword">struct</span> <a class="code" href="structfasta.html">fasta</a> *a, <span class="keyword">struct</span> <a class="code" href="structfasta.html">fasta</a> *b);
  24 00017 <span class="keywordtype">void</span> <a class="code" href="pairwise_8c.html#a13">populate</a> (<span class="keyword">struct</span> <a class="code" href="structfasta.html">fasta</a> *a);
  25 00018 <span class="keywordtype">void</span> <a class="code" href="pairwise_8c.html#a14">check_length</a> (<span class="keyword">struct</span> <a class="code" href="structfasta.html">fasta</a> **array);
  26 00019 <span class="keyword">struct </span><a class="code" href="structfasta.html">fasta</a> ** <a class="code" href="pairwise_8c.html#a15">read_fasta</a> (FILE *fh);
  27 </pre></div><hr size="1"><address style="align: right;"><small>Generated on Thu Jul 24 12:17:49 2003 for pairwise by
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  30 </a>1.3.2 </small></address>
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