datadb/compbio/cassandra/ProteinBean.java

   1 package compbio.cassandra;
   2
   3 import java.util.ArrayList;
   4 import java.util.LinkedHashMap;
   5 import java.util.List;
   6 import java.util.Map;
   7
   8 public class ProteinBean implements PredictionIndex{
   9         private String sequence;
  10         private List<String> jobid;
  11         private LinkedHashMap<String,String> predictions;
  12         private List<String> subProt;           // protein sequence divided by several parts for highlighting the particular part
  13         private int size;
  14
  15         public ProteinBean (String seq, Map<String,String> pred) {
  16                 this.sequence = seq;
  17                 this.predictions = new LinkedHashMap<String,String>();
  18                 this.jobid = new ArrayList<String>();
  19                 setPredictions(pred);
  20         }
  21
  22         public void setPredictions(Map<String,String> pred) {
  23                 for (String index : predIndex) {
  24                         this.predictions.put(index, pred.get(index));
  25                 }
  26                 this.size = predictions.size();
  27         }
  28
  29         public String getSequence () {
  30                 return sequence;
  31         }
  32
  33         public List<String> getJobid () {
  34                 return jobid;
  35         }
  36
  37         public void setJobid (String id) {
  38                 this.jobid.add(id);
  39         }
  40
  41         public int getSize () {
  42                 return size;
  43         }
  44
  45         public LinkedHashMap<String,String> getPredictions () {
  46                 return predictions;
  47         }
  48
  49         public void setSubProt(List<String> subProt) {
  50                 this.subProt = subProt;
  51         }
  52
  53         public List<String> getSubProt() {
  54                 return subProt;
  55         }
  56
  57 }