engine/compbio/engine/JpredJob.java

   1 package compbio.engine;
   2
   3 import java.util.ArrayList;
   4 import java.util.List;
   5
   6 import compbio.data.sequence.FastaSequence;
   7
   8 public class JpredJob extends Job {
   9         private String protein;
  10         private String log;
  11         private List<FastaSequence> predictions;
  12         private List<FastaSequence> alignment;
  13
  14         public JpredJob() {
  15                 super();
  16         }
  17
  18         public JpredJob(String jobid, String date1, String date2) {
  19                 super(jobid, date1, date2);
  20                 predictions = new ArrayList<FastaSequence>();
  21                 alignment = new ArrayList<FastaSequence>();
  22                 log = "";
  23         }
  24
  25         public JpredJob(String jobid, String date1, String date2, List<FastaSequence> alignment, List<FastaSequence> predictions) {
  26                 super(jobid, date1, date2);
  27                 this.alignment = alignment;
  28                 this.predictions = predictions;
  29         }
  30
  31         public void setProtein(String protein) {
  32                 this.protein = protein;
  33         }
  34
  35         public String getProtein() {
  36                 return protein;
  37         }
  38
  39         public void setLog(String log) {
  40                 this.log = log;
  41         }
  42
  43         public String getLog() {
  44                 return log;
  45         }
  46
  47         public void setAlignment(List<FastaSequence> al) {
  48                 this.alignment = al;
  49         }
  50
  51         public List<FastaSequence> getAlignment() {
  52                 return alignment;
  53         }
  54
  55         public void setPredictions(List<FastaSequence> pr) {
  56                 this.predictions = pr;
  57         }
  58
  59         public List<FastaSequence> getPredictions() {
  60                 return predictions;
  61         }
  62 }