server/compbio/ws/jpred/Jpred.java

   1 package compbio.ws.jpred;
   2
   3 import javax.jws.WebMethod;
   4 import javax.jws.WebParam;
   5 import javax.jws.WebService;
   6
   7 /**
   8  * Jpred interface of the corresponding web serice in ProteoCache
   9  *
  10  * @author Alexander Sherstnev
  11  * @author Natasha Sherstneva
  12  *
  13  * @version 1.0
  14  * @since Jan 2014
  15  */
  16 @WebService(targetNamespace = "http://server.proteocache.ws")
  17 public interface Jpred {
  18
  19         /**
  20          * Returns a number of jobs xecuted for a protein with a program of a
  21          * version
  22          *
  23          * @param sequence
  24          *            the protein sequence
  25          * @param program
  26          *            the program title
  27          * @param version
  28          *            the program version
  29          * @return a number of jobs executed for the protein
  30          */
  31         @WebMethod
  32         public String findSequence(@WebParam(name = "sequence") String sequence, @WebParam(name = "program") String program,
  33                         @WebParam(name = "version") String version);
  34
  35         /**
  36          * Returns a job ID executed for a protein with a program of a version if
  37          * the job archive file is available, otherwise returns empty string
  38          *
  39          * @param sequence
  40          *            the protein sequence
  41          * @param program
  42          *            the program title
  43          * @param version
  44          *            the program version
  45          * @return job ID
  46          */
  47         @WebMethod
  48         public String findJobForSequence(@WebParam(name = "sequence") String sequence, @WebParam(name = "program") String program,
  49                         @WebParam(name = "version") String version);
  50
  51         /**
  52          * Returns a relative web link to the job archive file for a ProteoCache
  53          * job, if the file is not available null is returned
  54          *
  55          * @param jobid
  56          *            the job ID
  57          * @return the job archive file web link or null
  58          */
  59         @WebMethod
  60         public String getArchive(@WebParam(name = "job") String jobid);
  61 }