server/compbio/ws/jpred/JpredWS.java

   1 package compbio.ws.jpred;
   2
   3 import javax.jws.WebService;
   4
   5 import org.apache.log4j.Logger;
   6
   7 import compbio.cassandra.CassandraNativeConnector;
   8 import compbio.cassandra.readers.SequenceReader;
   9
  10 @WebService(endpointInterface = "compbio.ws.jpred.Jpred", targetNamespace = "http://server.proteocache.ws", serviceName = "ProteoCacheWS", portName = "ProteoCacheWSPort")
  11 public class JpredWS implements Jpred {
  12         private static Logger log = Logger.getLogger(CassandraNativeConnector.class);
  13
  14         @Override
  15         public String findSequence(String sequence, String program, String version) {
  16                 CassandraNativeConnector dbconnector = new CassandraNativeConnector();
  17                 SequenceReader reader = new SequenceReader();
  18                 reader.setSession(dbconnector.getSession());
  19                 log.debug("ProteoCacheWS is connected:\n search for sequence: " + sequence + "\ncalculated wih  " + program + " (version; " + version + ")");
  20                 if (null != reader.readProteins(sequence, "whole")) {
  21                         return "The sequence " + sequence + " found. Calculated with " + program + "(" + version + ")";
  22                 }
  23                 return "The sequence " + sequence + " not found";
  24         }
  25
  26 }