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added two tests to ensure a vamsasArchive is readable and accessible as a Jar File.
[vamsas.git] / src /
2007-09-18 jprocteradded two tests to ensure a vamsasArchive is readable... tree | commitdiff
2007-09-14 jproctertidied command line interface (a bit) and implement... tree | commitdiff
2007-09-14 jprocterimplement low level functions for initialising a new... tree | commitdiff
2007-09-14 jproctermoved methods for opening a stored session document... tree | commitdiff
2007-09-14 jprocterimplement new client factory methods to open a stored... tree | commitdiff
2007-09-14 jproctertodo on importDocument (whether to exclude from interfa... tree | commitdiff
2007-09-14 jprocteradded new client factory methods to open a stored sessi... tree | commitdiff
2007-09-14 jprocterset printRootInfo so root labels are not lost. tree | commitdiff
2007-09-11 jprocterun-necessary spaces for bootstrap separator in root... tree | commitdiff
2007-09-11 jprocterbootstrap value parsing/recovery only for nodes with... tree | commitdiff
2007-09-11 jprocterrefactored initialisation of new session with existing... tree | commitdiff
2007-09-11 jproctertodo for importing stored session as a new session tree | commitdiff
2007-09-11 jprocterensure that document updates only occur if the vamsas... tree | commitdiff
2007-09-04 jproctermade serializable tree | commitdiff
2007-08-31 jprocterformatting tree | commitdiff
2007-08-31 jprocterrefactoring to enable initialisation of session from... tree | commitdiff
2007-08-31 jprocterbugfix for new appdata writes not overwriting existing... tree | commitdiff
2007-08-31 jprocterflags for reading/writing client or user appdata only. tree | commitdiff
2007-08-31 jprocteradded newSession methods to create a new vamsas session... tree | commitdiff
2007-08-28 jprocterlast core object source generation on... tree | commitdiff
2007-08-28 jprocternotional testing of client and user app data read and... tree | commitdiff
2007-08-28 jproctermore rar friendly appdata reference name and uniqueness... tree | commitdiff
2007-08-22 jprocterRemoved clientfile watcher elements in attempt to remov... tree | commitdiff
2007-08-22 jprocterattempts to remove any locks after client is finalized tree | commitdiff
2007-08-22 jprocterfixed regex and made 'improper' support for parsing... tree | commitdiff
2007-08-22 jprocterbetter 'main' test and support creation of treenodes... tree | commitdiff
2007-08-21 jprocterbeginning of 'simple' interface for newick string based... tree | commitdiff
2007-08-21 jprocterrefactored and new methods for making and processing... tree | commitdiff
2007-08-21 jprocterrefactored from newickfile tree | commitdiff
2007-08-21 jprocternewickfile class moved into its own package ready for... tree | commitdiff
2007-08-21 jprocternew marshaller instance ensures we use marshalling... tree | commitdiff
2007-08-17 jprocterformatting changes tree | commitdiff
2007-08-17 jproctersafety checks and informational Errors generated when... tree | commitdiff
2007-08-17 jprocterTODO comments tree | commitdiff
2007-08-17 jprocternew method to test if a particular file is or is relate... tree | commitdiff
2007-08-17 jprocterportability issue error messages tree | commitdiff
2007-08-17 jprocterfixed update of existing appdata jar entry bug (raised... tree | commitdiff
2007-08-16 jprocterrefactored IClientAppdata and implementation has been... tree | commitdiff
2007-08-16 jprocterrefactored AppData stream classes so they are returned... tree | commitdiff
2007-07-30 jprocternull pointer exception on attempt to release lock expli... tree | commitdiff
2007-07-15 jproctervorbaId generator constructs valid ID strings (NCNames) tree | commitdiff
2007-06-29 jprocter0 to unbounded Dataset/Sequence/DbRef/Map elements... tree | commitdiff
2007-06-28 jprocterlogic for debug message (if either or both mapped eleme... tree | commitdiff
2007-06-28 jprocterdebug message for default mapping tree | commitdiff
2007-06-28 jprocteradded mapType utilities. tree | commitdiff
2007-06-28 jprocterimported utility classes for working with MapTypes... tree | commitdiff
2007-06-28 jprocterprototype of Newick string parsing code and node bindin... tree | commitdiff
2007-06-28 jprocterraise the DOCUMENT_REQUESTTOCLOSE event and debug output. tree | commitdiff
2007-06-28 jprocteruse the simpleClient's lockFactory for the client's... tree | commitdiff
2007-06-28 jprocterdebugging on the haltWatch method tree | commitdiff
2007-06-28 jprocteruse of config class tree | commitdiff
2007-06-28 jprocterbeginnings of configuration settings class. Introduced... tree | commitdiff
2007-06-28 jproctermodified warning for unresolved IDRef during castor... tree | commitdiff
2007-06-28 jprocteradded check for 'broken update' - where vamsas document... tree | commitdiff
2007-06-28 jprocterend position not correctly set. tree | commitdiff
2007-06-28 jproctersequence mappings and DbRef mapping objects unified... tree | commitdiff
2007-06-12 jprocterfixed regex to remove all kinds of file separators... tree | commitdiff
2007-06-12 pmargueriteAdded to mechanism to determine if a client closing... tree | commitdiff
2007-05-22 jprocterschema changes: provenance-entry-date is now an xmlSche... tree | commitdiff
2007-05-21 jprocterlog validation errors which cause the 'mergeRoots'... tree | commitdiff
2007-05-21 pmargueriteVamsasSession: increased time before considering the... tree | commitdiff
2007-05-21 jproctertest cdoc object retrieve by VorbaId and add timeout... tree | commitdiff
2007-05-21 jproctertodo doc tree | commitdiff
2007-05-21 jprocterfix non-retrieval of vobject by vorba id on clientdoc... tree | commitdiff
2007-05-18 pmargueriteVamsasSession: fixed incorrectly stopping the EventGene... tree | commitdiff
2007-05-18 pmargueriteVamsasSession: insure the RemoveClientWatchCallBack... tree | commitdiff
2007-05-18 pmargueriteAdded support for crashed client. tree | commitdiff
2007-05-18 jprocterbetter command line processing options (load, save... tree | commitdiff
2007-05-18 jprocterjavadoc todo tree | commitdiff
2007-05-18 jprocterremoved old Mapping object dependency tree | commitdiff
2007-04-24 jproctercastor-1.1 source generation tree | commitdiff
2007-04-24 jprocterDescriptors live in uk.ac.vamsas.objects.core.descripto... tree | commitdiff
2007-04-24 jprocterpick manager and simulation of alignment modification... tree | commitdiff
2007-04-24 jprocterpart-implemented and *untested* tree | commitdiff
2007-04-24 jprocterintroduced hashCode based object change detection that... tree | commitdiff
2007-04-24 jprocterattempt to fix occasional backupSessionFile exception. tree | commitdiff
2007-04-24 jprocterambiguous import of 'Lock' removed. tree | commitdiff
2007-04-24 jprocterincorrect update approach (attempt prior to hashCode... tree | commitdiff
2007-04-24 jprocterint to long type change in castor-1.1(v) objects tree | commitdiff
2007-04-24 jprocterrebult for castor-1.1(vamsas version) tree | commitdiff
2007-03-20 jprocterupdate detection mechanism based comparing the differen... tree | commitdiff
2007-03-20 jprocterpass maintained hash of Vobject hash values to IdFactor... tree | commitdiff
2007-03-20 jproctercommented out methods that might be used for accessing... tree | commitdiff
2007-03-20 jprocterjavadoc tree | commitdiff
2007-03-20 jprocternew constructor to pass hash of Vobject hash values... tree | commitdiff
2007-03-19 jproctertrap exceptions during session events and ensure pick... tree | commitdiff
2007-03-19 jprocterdebug log output tree | commitdiff
2007-03-15 jprocterswitched picker shutdown to after finalize() call ... tree | commitdiff
2007-03-15 jprocterWatcherElement reference should be nulled by caller... tree | commitdiff
2007-03-15 jprocterinterrupt before wait sleep so haltWatchers is more... tree | commitdiff
2007-03-15 jprocterMessages are thrown away when passThru is false (rather... tree | commitdiff
2007-03-15 jprocterclosing channel always releases lock (on windows anyhow) tree | commitdiff
2007-03-15 jprocteroccasional null pointer exception tree | commitdiff
2007-03-15 jprocterensured backups are only made when backup==true tree | commitdiff
2007-03-15 jprocterremoved infinite loop on server shutdown tree | commitdiff
2007-03-08 jproctermore debug messages. tree | commitdiff
2007-03-08 jproctersimplified and bugfixed occasional lock contention. tree | commitdiff
2007-03-08 jprocterbugfixes for shutdown and null message reception. tree | commitdiff
2007-03-08 jprocterutility functions for dealing with Range and Properties... tree | commitdiff
2007-03-08 jprocterremove unnecessary existence checks. tree | commitdiff
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