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2007-08-22	jprocter	fixed regex and made 'improper' support for parsing...	commit \| commitdiff \| tree
2007-08-22	jprocter	better 'main' test and support creation of treenodes...	commit \| commitdiff \| tree
2007-08-21	jprocter	beginning of 'simple' interface for newick string based...	commit \| commitdiff \| tree
2007-08-21	jprocter	refactored and new methods for making and processing...	commit \| commitdiff \| tree
2007-08-21	jprocter	refactored from newickfile	commit \| commitdiff \| tree
2007-08-21	jprocter	newickfile class moved into its own package ready for...	commit \| commitdiff \| tree
2007-08-21	jprocter	new marshaller instance ensures we use marshalling...	commit \| commitdiff \| tree
2007-08-17	jprocter	formatting changes	commit \| commitdiff \| tree
2007-08-17	jprocter	safety checks and informational Errors generated when...	commit \| commitdiff \| tree
2007-08-17	jprocter	TODO comments	commit \| commitdiff \| tree
2007-08-17	jprocter	new method to test if a particular file is or is related...	commit \| commitdiff \| tree
2007-08-17	jprocter	portability issue error messages	commit \| commitdiff \| tree
2007-08-17	jprocter	fixed update of existing appdata jar entry bug (raised...	commit \| commitdiff \| tree
2007-08-16	jprocter	refactored IClientAppdata and implementation has been...	commit \| commitdiff \| tree
2007-08-16	jprocter	refactored AppData stream classes so they are returned...	commit \| commitdiff \| tree
2007-07-30	jprocter	updated classpath for eclipse project	commit \| commitdiff \| tree
2007-07-30	jprocter	null pointer exception on attempt to release lock explicitly.	commit \| commitdiff \| tree
2007-07-15	jprocter	vorbaId generator constructs valid ID strings (NCNames)	commit \| commitdiff \| tree
2007-06-29	jprocter	0 to unbounded Dataset/Sequence/DbRef/Map elements...	commit \| commitdiff \| tree
2007-06-28	jprocter	logic for debug message (if either or both mapped element...	commit \| commitdiff \| tree
2007-06-28	jprocter	debug message for default mapping	commit \| commitdiff \| tree
2007-06-28	jprocter	added mapType utilities.	commit \| commitdiff \| tree
2007-06-28	jprocter	imported utility classes for working with MapTypes...	commit \| commitdiff \| tree
2007-06-28	jprocter	quieter logging	commit \| commitdiff \| tree
2007-06-28	jprocter	build on 28th June	commit \| commitdiff \| tree
2007-06-28	jprocter	updated castor to castor-1.1-cycle	commit \| commitdiff \| tree
2007-06-28	jprocter	prototype of Newick string parsing code and node binding...	commit \| commitdiff \| tree
2007-06-28	jprocter	raise the DOCUMENT_REQUESTTOCLOSE event and debug output.	commit \| commitdiff \| tree
2007-06-28	jprocter	use the simpleClient's lockFactory for the client's...	commit \| commitdiff \| tree
2007-06-28	jprocter	debugging on the haltWatch method	commit \| commitdiff \| tree
2007-06-28	jprocter	use of config class	commit \| commitdiff \| tree
2007-06-28	jprocter	beginnings of configuration settings class. Introduced...	commit \| commitdiff \| tree
2007-06-28	jprocter	modified warning for unresolved IDRef during castor...	commit \| commitdiff \| tree
2007-06-28	jprocter	added check for 'broken update' - where vamsas document...	commit \| commitdiff \| tree
2007-06-28	jprocter	end position not correctly set.	commit \| commitdiff \| tree
2007-06-28	jprocter	sequence mappings and DbRef mapping objects unified...	commit \| commitdiff \| tree
2007-06-28	jprocter	cyclic IDREF patched castor-1.1.1 source	commit \| commitdiff \| tree
2007-06-28	jprocter	less verbose default logging	commit \| commitdiff \| tree
2007-06-12	jprocter	fixed regex to remove all kinds of file separators...	commit \| commitdiff \| tree
2007-05-22	jprocter	schema changes: provenance-entry-date is now an xmlSchema...	commit \| commitdiff \| tree
2007-05-21	jprocter	log validation errors which cause the 'mergeRoots'...	commit \| commitdiff \| tree
2007-05-21	jprocter	test cdoc object retrieve by VorbaId and add timeout...	commit \| commitdiff \| tree
2007-05-21	jprocter	todo doc	commit \| commitdiff \| tree
2007-05-21	jprocter	fix non-retrieval of vobject by vorba id on clientdoc...	commit \| commitdiff \| tree
2007-05-18	jprocter	better command line processing options (load, save...	commit \| commitdiff \| tree
2007-05-18	jprocter	javadoc todo	commit \| commitdiff \| tree
2007-05-18	jprocter	removed old Mapping object dependency	commit \| commitdiff \| tree
2007-04-24	jprocter	castor-1.1 source generation	commit \| commitdiff \| tree
2007-04-24	jprocter	Descriptors live in uk.ac.vamsas.objects.core.descriptors...	commit \| commitdiff \| tree
2007-04-24	jprocter	relatively silent debug state (have to sort out of...	commit \| commitdiff \| tree
2007-04-24	jprocter	pick manager and simulation of alignment modification...	commit \| commitdiff \| tree
2007-04-24	jprocter	part-implemented and untested	commit \| commitdiff \| tree
2007-04-24	jprocter	introduced hashCode based object change detection that...	commit \| commitdiff \| tree
2007-04-24	jprocter	attempt to fix occasional backupSessionFile exception.	commit \| commitdiff \| tree
2007-04-24	jprocter	ambiguous import of 'Lock' removed.	commit \| commitdiff \| tree
2007-04-24	jprocter	incorrect update approach (attempt prior to hashCode...	commit \| commitdiff \| tree
2007-04-24	jprocter	int to long type change in castor-1.1(v) objects	commit \| commitdiff \| tree
2007-04-24	jprocter	rebult for castor-1.1(vamsas version)	commit \| commitdiff \| tree
2007-04-24	jprocter	updated to castor-1.1 + Vamsas Specific hashCode modification	commit \| commitdiff \| tree
2007-04-24	jprocter	fixed session log configuration	commit \| commitdiff \| tree
2007-04-24	jprocter	updated to castor-1.1 + Vamsas Specific hashCode modification	commit \| commitdiff \| tree
2007-04-24	jprocter	updated to castor-1.1 + Vamsas Specific hashCode modification	commit \| commitdiff \| tree
2007-04-24	jprocter	updated to castor-1.1 + Vamsas Specific hashCode modification	commit \| commitdiff \| tree
2007-03-20	jprocter	update detection mechanism based comparing the difference...	commit \| commitdiff \| tree
2007-03-20	jprocter	update detection mechanism based comparing the difference...	commit \| commitdiff \| tree
2007-03-20	jprocter	pass maintained hash of Vobject hash values to IdFactory...	commit \| commitdiff \| tree
2007-03-20	jprocter	commented out methods that might be used for accessing...	commit \| commitdiff \| tree
2007-03-20	jprocter	javadoc	commit \| commitdiff \| tree
2007-03-20	jprocter	new constructor to pass hash of Vobject hash values...	commit \| commitdiff \| tree
2007-03-19	jprocter	trap exceptions during session events and ensure pick...	commit \| commitdiff \| tree
2007-03-19	jprocter	debug log output	commit \| commitdiff \| tree
2007-03-15	jprocter	switched picker shutdown to after finalize() call ...	commit \| commitdiff \| tree
2007-03-15	jprocter	WatcherElement reference should be nulled by caller...	commit \| commitdiff \| tree
2007-03-15	jprocter	interrupt before wait sleep so haltWatchers is more...	commit \| commitdiff \| tree
2007-03-15	jprocter	Messages are thrown away when passThru is false (rather...	commit \| commitdiff \| tree
2007-03-15	jprocter	closing channel always releases lock (on windows anyhow)	commit \| commitdiff \| tree
2007-03-15	jprocter	occasional null pointer exception	commit \| commitdiff \| tree
2007-03-15	jprocter	ensured backups are only made when backup==true	commit \| commitdiff \| tree
2007-03-15	jprocter	removed infinite loop on server shutdown	commit \| commitdiff \| tree
2007-03-08	jprocter	more debug messages.	commit \| commitdiff \| tree
2007-03-08	jprocter	simplified and bugfixed occasional lock contention.	commit \| commitdiff \| tree
2007-03-08	jprocter	bugfixes for shutdown and null message reception.	commit \| commitdiff \| tree
2007-03-08	jprocter	utility functions for dealing with Range and Properties...	commit \| commitdiff \| tree
2007-03-08	jprocter	remove unnecessary existence checks.	commit \| commitdiff \| tree
2007-03-08	jprocter	remove unnecessary existence checks.	commit \| commitdiff \| tree
2007-03-06	jprocter	stub for the dom tree update event generator.	commit \| commitdiff \| tree
2007-03-06	jprocter	added PickManager test code. Current state of library...	commit \| commitdiff \| tree
2007-03-06	jprocter	synchronized methods to ensure thread safety for underlying...	commit \| commitdiff \| tree
2007-02-27	jprocter	ensured single instance of vamsasarchive io handler...	commit \| commitdiff \| tree
2007-02-12	jprocter	non-1.4 factory construtors removed.	commit \| commitdiff \| tree
2007-01-12	jprocter	log config (with SESSIONLOG config too).	commit \| commitdiff \| tree
2007-01-12	jprocter	SimpleClient implementation testable against uk.ac...	commit \| commitdiff \| tree
2007-01-12	jprocter	fixed bug leaving copies of archive backups (no testcase...	commit \| commitdiff \| tree
2007-01-12	jprocter	extended to test against SimpleClient implementation	commit \| commitdiff \| tree
2007-01-12	jprocter	added TODO for testing getAppData method before migration...	commit \| commitdiff \| tree
2007-01-12	jprocter	untested watcherElement for spotting changes in SessionFlagF...	commit \| commitdiff \| tree
2007-01-12	jprocter	formal polling thread for particular FileWatcher types...	commit \| commitdiff \| tree
2007-01-12	jprocter	method to get File object being watched	commit \| commitdiff \| tree
2007-01-12	jprocter	fixed subtle bug in closeChannel behaviour on lock...	commit \| commitdiff \| tree
2007-01-12	jprocter	wrapper for conditionally passing picks onto the client...	commit \| commitdiff \| tree
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