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2007-09-27	jprocter	ultraparanoid zip entry safename function	commit \| commitdiff \| tree
2007-09-27	jprocter	Switched to using pure java Apache Zip implementation	commit \| commitdiff \| tree
2007-09-27	jprocter	imported from ant 1.7 source distribution	commit \| commitdiff \| tree
2007-09-27	jprocter	made finalize check before zeroing self-references...	commit \| commitdiff \| tree
2007-09-27	jprocter	Added test to ensure all bytes are transferred during...	commit \| commitdiff \| tree
2007-09-24	jprocter	test for property type and property type constants	commit \| commitdiff \| tree
2007-09-18	jprocter	fixed pathological vamsas archive issue related to...	commit \| commitdiff \| tree
2007-09-18	jprocter	really simple test for accessibility of a zip file...	commit \| commitdiff \| tree
2007-09-18	jprocter	Java ZipFile code does not cope with entries with lots...	commit \| commitdiff \| tree
2007-09-18	jprocter	added retry mechanism for opening of vamsas archives...	commit \| commitdiff \| tree
2007-09-18	jprocter	note on occasional null pointer exceptions raised on...	commit \| commitdiff \| tree
2007-09-18	jprocter	added two tests to ensure a vamsasArchive is readable...	commit \| commitdiff \| tree
2007-09-14	jprocter	added openSession from Stored Document ClientFactory...	commit \| commitdiff \| tree
2007-09-14	jprocter	tidied command line interface (a bit) and implement...	commit \| commitdiff \| tree
2007-09-14	jprocter	implement low level functions for initialising a new...	commit \| commitdiff \| tree
2007-09-14	jprocter	moved methods for opening a stored session document...	commit \| commitdiff \| tree
2007-09-14	jprocter	implement new client factory methods to open a stored...	commit \| commitdiff \| tree
2007-09-14	jprocter	todo on importDocument (whether to exclude from interface...	commit \| commitdiff \| tree
2007-09-14	jprocter	added new client factory methods to open a stored session...	commit \| commitdiff \| tree
2007-09-14	jprocter	set printRootInfo so root labels are not lost.	commit \| commitdiff \| tree
2007-09-11	jprocter	un-necessary spaces for bootstrap separator in root...	commit \| commitdiff \| tree
2007-09-11	jprocter	bootstrap value parsing/recovery only for nodes with...	commit \| commitdiff \| tree
2007-09-11	jprocter	refactored initialisation of new session with existing...	commit \| commitdiff \| tree
2007-09-11	jprocter	todo for importing stored session as a new session	commit \| commitdiff \| tree
2007-09-11	jprocter	ensure that document updates only occur if the vamsas...	commit \| commitdiff \| tree
2007-09-04	jprocter	made serializable	commit \| commitdiff \| tree
2007-08-31	jprocter	formatting	commit \| commitdiff \| tree
2007-08-31	jprocter	refactoring to enable initialisation of session from...	commit \| commitdiff \| tree
2007-08-31	jprocter	bugfix for new appdata writes not overwriting existing...	commit \| commitdiff \| tree
2007-08-31	jprocter	vamsas client build with new ClientFactory methods...	commit \| commitdiff \| tree
2007-08-31	jprocter	flags for reading/writing client or user appdata only.	commit \| commitdiff \| tree
2007-08-31	jprocter	added newSession methods to create a new vamsas session...	commit \| commitdiff \| tree
2007-08-28	jprocter	last core object source generation on...	commit \| commitdiff \| tree
2007-08-28	jprocter	notional testing of client and user app data read and...	commit \| commitdiff \| tree
2007-08-28	jprocter	more rar friendly appdata reference name and uniqueness...	commit \| commitdiff \| tree
2007-08-22	jprocter	hacked castor to be a bit faster (IdentitySet and log...	commit \| commitdiff \| tree
2007-08-22	jprocter	Removed clientfile watcher elements in attempt to remove...	commit \| commitdiff \| tree
2007-08-22	jprocter	attempts to remove any locks after client is finalized	commit \| commitdiff \| tree
2007-08-22	jprocter	fixed regex and made 'improper' support for parsing...	commit \| commitdiff \| tree
2007-08-22	jprocter	better 'main' test and support creation of treenodes...	commit \| commitdiff \| tree
2007-08-21	jprocter	beginning of 'simple' interface for newick string based...	commit \| commitdiff \| tree
2007-08-21	jprocter	refactored and new methods for making and processing...	commit \| commitdiff \| tree
2007-08-21	jprocter	refactored from newickfile	commit \| commitdiff \| tree
2007-08-21	jprocter	newickfile class moved into its own package ready for...	commit \| commitdiff \| tree
2007-08-21	jprocter	new marshaller instance ensures we use marshalling...	commit \| commitdiff \| tree
2007-08-17	jprocter	formatting changes	commit \| commitdiff \| tree
2007-08-17	jprocter	safety checks and informational Errors generated when...	commit \| commitdiff \| tree
2007-08-17	jprocter	TODO comments	commit \| commitdiff \| tree
2007-08-17	jprocter	new method to test if a particular file is or is related...	commit \| commitdiff \| tree
2007-08-17	jprocter	portability issue error messages	commit \| commitdiff \| tree
2007-08-17	jprocter	fixed update of existing appdata jar entry bug (raised...	commit \| commitdiff \| tree
2007-08-16	jprocter	refactored IClientAppdata and implementation has been...	commit \| commitdiff \| tree
2007-08-16	jprocter	refactored AppData stream classes so they are returned...	commit \| commitdiff \| tree
2007-07-30	jprocter	updated classpath for eclipse project	commit \| commitdiff \| tree
2007-07-30	jprocter	null pointer exception on attempt to release lock explicitly.	commit \| commitdiff \| tree
2007-07-15	jprocter	vorbaId generator constructs valid ID strings (NCNames)	commit \| commitdiff \| tree
2007-06-29	jprocter	0 to unbounded Dataset/Sequence/DbRef/Map elements...	commit \| commitdiff \| tree
2007-06-28	jprocter	logic for debug message (if either or both mapped element...	commit \| commitdiff \| tree
2007-06-28	jprocter	debug message for default mapping	commit \| commitdiff \| tree
2007-06-28	jprocter	added mapType utilities.	commit \| commitdiff \| tree
2007-06-28	jprocter	imported utility classes for working with MapTypes...	commit \| commitdiff \| tree
2007-06-28	jprocter	quieter logging	commit \| commitdiff \| tree
2007-06-28	jprocter	build on 28th June	commit \| commitdiff \| tree
2007-06-28	jprocter	updated castor to castor-1.1-cycle	commit \| commitdiff \| tree
2007-06-28	jprocter	prototype of Newick string parsing code and node binding...	commit \| commitdiff \| tree
2007-06-28	jprocter	raise the DOCUMENT_REQUESTTOCLOSE event and debug output.	commit \| commitdiff \| tree
2007-06-28	jprocter	use the simpleClient's lockFactory for the client's...	commit \| commitdiff \| tree
2007-06-28	jprocter	debugging on the haltWatch method	commit \| commitdiff \| tree
2007-06-28	jprocter	use of config class	commit \| commitdiff \| tree
2007-06-28	jprocter	beginnings of configuration settings class. Introduced...	commit \| commitdiff \| tree
2007-06-28	jprocter	modified warning for unresolved IDRef during castor...	commit \| commitdiff \| tree
2007-06-28	jprocter	added check for 'broken update' - where vamsas document...	commit \| commitdiff \| tree
2007-06-28	jprocter	end position not correctly set.	commit \| commitdiff \| tree
2007-06-28	jprocter	sequence mappings and DbRef mapping objects unified...	commit \| commitdiff \| tree
2007-06-28	jprocter	cyclic IDREF patched castor-1.1.1 source	commit \| commitdiff \| tree
2007-06-28	jprocter	less verbose default logging	commit \| commitdiff \| tree
2007-06-12	jprocter	fixed regex to remove all kinds of file separators...	commit \| commitdiff \| tree
2007-05-22	jprocter	schema changes: provenance-entry-date is now an xmlSchema...	commit \| commitdiff \| tree
2007-05-21	jprocter	log validation errors which cause the 'mergeRoots'...	commit \| commitdiff \| tree
2007-05-21	jprocter	test cdoc object retrieve by VorbaId and add timeout...	commit \| commitdiff \| tree
2007-05-21	jprocter	todo doc	commit \| commitdiff \| tree
2007-05-21	jprocter	fix non-retrieval of vobject by vorba id on clientdoc...	commit \| commitdiff \| tree
2007-05-18	jprocter	better command line processing options (load, save...	commit \| commitdiff \| tree
2007-05-18	jprocter	javadoc todo	commit \| commitdiff \| tree
2007-05-18	jprocter	removed old Mapping object dependency	commit \| commitdiff \| tree
2007-04-24	jprocter	castor-1.1 source generation	commit \| commitdiff \| tree
2007-04-24	jprocter	Descriptors live in uk.ac.vamsas.objects.core.descriptors...	commit \| commitdiff \| tree
2007-04-24	jprocter	relatively silent debug state (have to sort out of...	commit \| commitdiff \| tree
2007-04-24	jprocter	pick manager and simulation of alignment modification...	commit \| commitdiff \| tree
2007-04-24	jprocter	part-implemented and untested	commit \| commitdiff \| tree
2007-04-24	jprocter	introduced hashCode based object change detection that...	commit \| commitdiff \| tree
2007-04-24	jprocter	attempt to fix occasional backupSessionFile exception.	commit \| commitdiff \| tree
2007-04-24	jprocter	ambiguous import of 'Lock' removed.	commit \| commitdiff \| tree
2007-04-24	jprocter	incorrect update approach (attempt prior to hashCode...	commit \| commitdiff \| tree
2007-04-24	jprocter	int to long type change in castor-1.1(v) objects	commit \| commitdiff \| tree
2007-04-24	jprocter	rebult for castor-1.1(vamsas version)	commit \| commitdiff \| tree
2007-04-24	jprocter	updated to castor-1.1 + Vamsas Specific hashCode modification	commit \| commitdiff \| tree
2007-04-24	jprocter	fixed session log configuration	commit \| commitdiff \| tree
2007-04-24	jprocter	updated to castor-1.1 + Vamsas Specific hashCode modification	commit \| commitdiff \| tree
2007-04-24	jprocter	updated to castor-1.1 + Vamsas Specific hashCode modification	commit \| commitdiff \| tree
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