src/jalview/datamodel/SecondaryStructureAnnotation.java

   1 package jalview.datamodel;
   2
   3 import fr.orsay.lri.varna.models.rna.RNA;
   4
   5 public class SecondaryStructureAnnotation extends AlignmentAnnotation
   6 {
   7
   8
   9         private static RNA _rna = null;
  10           public SecondaryStructureAnnotation (RNA rna)
  11           {
  12                  super("Secondary Structure", "Un truc trop cool",getAnnotation(rna));
  13
  14
  15             _rna = rna;
  16           }
  17
  18           public RNA getRNA()
  19          {
  20                   return _rna;
  21          }
  22           public static Annotation[] getAnnotation(RNA rna)
  23           {
  24                   Annotation[] ann =  new Annotation[rna.getSize()];
  25                          for(int i=0;i<ann.length;i++)
  26                          {
  27                                  ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);;
  28                          }
  29                   return ann;
  30           }
  31 }