Add support RNAML format
authorAnne Menard <menard.annec@gmail.com>
Thu, 5 Jul 2012 09:49:15 +0000 (11:49 +0200)
committerAnne Menard <menard.annec@gmail.com>
Thu, 5 Jul 2012 09:49:15 +0000 (11:49 +0200)
commita7f8fa9c06d82efbbdbc6a0bf1054bb21610b353
tree1d452744ee1a1b3329db462b8e732b2f6315080a
parent54b98888f691a29c2bdeedcfc120036e921e73d6
Add support RNAML format
37 files changed:
.classpath
.externalToolBuilders/Jalview Release 2.7 build.xml [Builder].launch [new file with mode: 0644]
.project
.settings/org.eclipse.jdt.core.prefs [new file with mode: 0644]
.settings/org.eclipse.ltk.core.refactoring.prefs [new file with mode: 0644]
lib/VARNAv3-9-dev.jar
src/MCview/PDBViewer.java
src/MCview/PDBfile.java
src/jalview/analysis/Rna.java
src/jalview/appletgui/AlignFrame.java
src/jalview/datamodel/SecondaryStructureAnnotation.java [new file with mode: 0644]
src/jalview/datamodel/Sequence.java
src/jalview/gui/AppVarna.java
src/jalview/gui/AppVarnaBinding.java
src/jalview/gui/AssociatePdbFileWithSeq.java
src/jalview/gui/PopupMenu.java
src/jalview/io/AlignFile.java
src/jalview/io/AppletFormatAdapter.java
src/jalview/io/BLCFile.java
src/jalview/io/ClustalFile.java
src/jalview/io/FastaFile.java
src/jalview/io/FeaturesFile.java
src/jalview/io/IdentifyFile.java
src/jalview/io/JPredFile.java
src/jalview/io/JalviewFileChooser.java
src/jalview/io/MSFfile.java
src/jalview/io/PIRFile.java
src/jalview/io/PfamFile.java
src/jalview/io/PileUpfile.java
src/jalview/io/RnamlFile.java [new file with mode: 0644]
src/jalview/io/SimpleBlastFile.java
src/jalview/io/StockholmFile.java
src/jalview/io/TCoffeeScoreFile.java
src/jalview/renderer/AnnotationRenderer.java
src/jalview/schemes/ResidueProperties.java
src/jalview/ws/jws2/AAConsClient.java
test/jalview/io/TCoffeeScoreFileTest.java