Add support RNAML format

[jalview.git] / src / jalview / appletgui / AlignFrame.java

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 4948613..6876984 100644 (file)
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -92,6 +92,14 @@ import java.util.List;
 import java.util.StringTokenizer;\r
 import java.util.Vector;\r
 \r
+import javax.xml.parsers.ParserConfigurationException;\r
+\r
+import org.xml.sax.SAXException;\r
+\r
+import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;\r
+import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed;\r
+import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied;\r
+\r
 public class AlignFrame extends EmbmenuFrame implements ActionListener,  ItemListener, KeyListener\r
 {\r
   public AlignmentPanel alignPanel;\r
@@ -3625,8 +3633,13 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,  ItemLis
    * @param source File/URL/T-COFFEE score file contents\r
    * @throws IOException\r
    * @return true if alignment was annotated with data from source\r
+ * @throws SAXException \r
+ * @throws ParserConfigurationException \r
+ * @throws ExceptionFileFormatOrSyntax \r
+ * @throws ExceptionLoadingFailed \r
+ * @throws ExceptionPermissionDenied \r
    */\r
-  public boolean loadScoreFile( String source ) throws IOException {\r
+  public boolean loadScoreFile( String source ) throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed {\r
 \r
     TCoffeeScoreFile file = new TCoffeeScoreFile(source, AppletFormatAdapter.checkProtocol(source));\r
          if( !file.isValid()) {\r