Add support RNAML format

[jalview.git] / src / jalview / io / StockholmFile.java

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index 6b60cd5..2827191 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -23,7 +23,15 @@ package jalview.io;
 import java.io.*;\r
 import java.util.*;\r
 \r
+import javax.xml.parsers.ParserConfigurationException;\r
+\r
+import org.xml.sax.SAXException;\r
+\r
 import com.stevesoft.pat.*;\r
+\r
+import fr.orsay.lri.varna.exceptions.ExceptionFileFormatOrSyntax;\r
+import fr.orsay.lri.varna.exceptions.ExceptionLoadingFailed;\r
+import fr.orsay.lri.varna.exceptions.ExceptionPermissionDenied;\r
 import jalview.datamodel.*;\r
 import jalview.analysis.Rna;\r
 \r
@@ -49,12 +57,12 @@ public class StockholmFile extends AlignFile
   {\r
   }\r
 \r
-  public StockholmFile(String inFile, String type) throws IOException\r
+  public StockholmFile(String inFile, String type) throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed\r
   {\r
     super(inFile, type);\r
   }\r
 \r
-  public StockholmFile(FileParse source) throws IOException\r
+  public StockholmFile(FileParse source) throws IOException, ExceptionFileFormatOrSyntax, ParserConfigurationException, SAXException, ExceptionPermissionDenied, ExceptionLoadingFailed\r
   {\r
     super(source);\r
   }\r