Add support RNAML format

[jalview.git] / src / jalview / analysis / Rna.java

diff --git a/src/jalview/analysis/Rna.java b/src/jalview/analysis/Rna.java
index ba18732..c309dfc 100644 (file)
--- a/src/jalview/analysis/Rna.java
+++ b/src/jalview/analysis/Rna.java
@@ -54,12 +54,12 @@ public class Rna
     {
       char base = line.charAt(i);
 
-      if ((base == '<') || (base == '(') || (base == '{') || (base == '['))
+      if ((base == '<') || (base == '(') || (base == '{') || (base == '[')|| (base == 'A')|| (base == 'B')|| (base == 'C')|| (base == 'D'))
       {
         stack.push(i);
       }
-      else if ((base == '>') || (base == ')') || (base == '}')
-              || (base == ']'))
+      else if ((base == '>') || (base == ')') || (base == '}')|| (base == ']')|| (base == 'a')|| (base == 'b')|| (base == 'c')|| (base == 'd'))
+      
       {
 
         if (stack.isEmpty())