2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
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3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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11 * Jalview is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty
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13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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14 * PURPOSE. See the GNU General Public License for more details.
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16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 package jalview.schemabinding.version2.descriptors;
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20 //---------------------------------/
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21 //- Imported classes and packages -/
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22 //---------------------------------/
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24 import jalview.schemabinding.version2.JalviewModelSequence;
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27 * Class JalviewModelSequenceDescriptor.
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29 * @version $Revision$ $Date$
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31 public class JalviewModelSequenceDescriptor extends
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32 org.exolab.castor.xml.util.XMLClassDescriptorImpl
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35 // --------------------------/
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36 // - Class/Member Variables -/
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37 // --------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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59 // ----------------/
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60 // - Constructors -/
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61 // ----------------/
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63 public JalviewModelSequenceDescriptor()
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66 _nsURI = "www.jalview.org";
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67 _elementDefinition = false;
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69 // -- set grouping compositor
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70 setCompositorAsSequence();
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71 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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72 org.exolab.castor.mapping.FieldHandler handler = null;
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73 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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74 // -- initialize attribute descriptors
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76 // -- initialize element descriptors
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79 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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80 jalview.schemabinding.version2.JSeq.class, "_JSeqList", "JSeq",
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81 org.exolab.castor.xml.NodeType.Element);
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82 handler = new org.exolab.castor.xml.XMLFieldHandler()
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84 public java.lang.Object getValue(java.lang.Object object)
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85 throws IllegalStateException
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87 JalviewModelSequence target = (JalviewModelSequence) object;
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88 return target.getJSeq();
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91 public void setValue(java.lang.Object object, java.lang.Object value)
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92 throws IllegalStateException, IllegalArgumentException
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96 JalviewModelSequence target = (JalviewModelSequence) object;
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97 target.addJSeq((jalview.schemabinding.version2.JSeq) value);
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98 } catch (java.lang.Exception ex)
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100 throw new IllegalStateException(ex.toString());
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104 public void resetValue(Object object) throws IllegalStateException,
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105 IllegalArgumentException
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109 JalviewModelSequence target = (JalviewModelSequence) object;
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110 target.removeAllJSeq();
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111 } catch (java.lang.Exception ex)
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113 throw new IllegalStateException(ex.toString());
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117 public java.lang.Object newInstance(java.lang.Object parent)
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119 return new jalview.schemabinding.version2.JSeq();
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122 desc.setHandler(handler);
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123 desc.setNameSpaceURI("www.jalview.org");
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124 desc.setRequired(true);
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125 desc.setMultivalued(true);
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126 addFieldDescriptor(desc);
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128 // -- validation code for: _JSeqList
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129 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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130 fieldValidator.setMinOccurs(1);
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131 { // -- local scope
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133 desc.setValidator(fieldValidator);
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135 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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136 jalview.schemabinding.version2.JGroup.class, "_JGroupList",
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137 "JGroup", org.exolab.castor.xml.NodeType.Element);
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138 handler = new org.exolab.castor.xml.XMLFieldHandler()
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140 public java.lang.Object getValue(java.lang.Object object)
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141 throws IllegalStateException
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143 JalviewModelSequence target = (JalviewModelSequence) object;
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144 return target.getJGroup();
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147 public void setValue(java.lang.Object object, java.lang.Object value)
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148 throws IllegalStateException, IllegalArgumentException
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152 JalviewModelSequence target = (JalviewModelSequence) object;
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153 target.addJGroup((jalview.schemabinding.version2.JGroup) value);
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154 } catch (java.lang.Exception ex)
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156 throw new IllegalStateException(ex.toString());
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160 public void resetValue(Object object) throws IllegalStateException,
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161 IllegalArgumentException
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165 JalviewModelSequence target = (JalviewModelSequence) object;
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166 target.removeAllJGroup();
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167 } catch (java.lang.Exception ex)
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169 throw new IllegalStateException(ex.toString());
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173 public java.lang.Object newInstance(java.lang.Object parent)
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175 return new jalview.schemabinding.version2.JGroup();
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178 desc.setHandler(handler);
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179 desc.setNameSpaceURI("www.jalview.org");
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180 desc.setMultivalued(true);
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181 addFieldDescriptor(desc);
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183 // -- validation code for: _JGroupList
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184 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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185 fieldValidator.setMinOccurs(0);
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186 { // -- local scope
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188 desc.setValidator(fieldValidator);
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189 // -- _viewportList
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190 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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191 jalview.schemabinding.version2.Viewport.class, "_viewportList",
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192 "Viewport", org.exolab.castor.xml.NodeType.Element);
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193 handler = new org.exolab.castor.xml.XMLFieldHandler()
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195 public java.lang.Object getValue(java.lang.Object object)
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196 throws IllegalStateException
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198 JalviewModelSequence target = (JalviewModelSequence) object;
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199 return target.getViewport();
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202 public void setValue(java.lang.Object object, java.lang.Object value)
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203 throws IllegalStateException, IllegalArgumentException
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207 JalviewModelSequence target = (JalviewModelSequence) object;
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209 .addViewport((jalview.schemabinding.version2.Viewport) value);
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210 } catch (java.lang.Exception ex)
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212 throw new IllegalStateException(ex.toString());
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216 public void resetValue(Object object) throws IllegalStateException,
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217 IllegalArgumentException
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221 JalviewModelSequence target = (JalviewModelSequence) object;
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222 target.removeAllViewport();
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223 } catch (java.lang.Exception ex)
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225 throw new IllegalStateException(ex.toString());
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229 public java.lang.Object newInstance(java.lang.Object parent)
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231 return new jalview.schemabinding.version2.Viewport();
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234 desc.setHandler(handler);
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235 desc.setNameSpaceURI("www.jalview.org");
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236 desc.setRequired(true);
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237 desc.setMultivalued(true);
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238 addFieldDescriptor(desc);
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240 // -- validation code for: _viewportList
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241 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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242 fieldValidator.setMinOccurs(1);
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243 { // -- local scope
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245 desc.setValidator(fieldValidator);
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246 // -- _userColoursList
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247 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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248 jalview.schemabinding.version2.UserColours.class,
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249 "_userColoursList", "UserColours",
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250 org.exolab.castor.xml.NodeType.Element);
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251 handler = new org.exolab.castor.xml.XMLFieldHandler()
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253 public java.lang.Object getValue(java.lang.Object object)
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254 throws IllegalStateException
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256 JalviewModelSequence target = (JalviewModelSequence) object;
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257 return target.getUserColours();
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260 public void setValue(java.lang.Object object, java.lang.Object value)
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261 throws IllegalStateException, IllegalArgumentException
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265 JalviewModelSequence target = (JalviewModelSequence) object;
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267 .addUserColours((jalview.schemabinding.version2.UserColours) value);
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268 } catch (java.lang.Exception ex)
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270 throw new IllegalStateException(ex.toString());
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274 public void resetValue(Object object) throws IllegalStateException,
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275 IllegalArgumentException
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279 JalviewModelSequence target = (JalviewModelSequence) object;
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280 target.removeAllUserColours();
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281 } catch (java.lang.Exception ex)
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283 throw new IllegalStateException(ex.toString());
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287 public java.lang.Object newInstance(java.lang.Object parent)
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289 return new jalview.schemabinding.version2.UserColours();
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292 desc.setHandler(handler);
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293 desc.setNameSpaceURI("www.jalview.org");
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294 desc.setMultivalued(true);
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295 addFieldDescriptor(desc);
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297 // -- validation code for: _userColoursList
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298 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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299 fieldValidator.setMinOccurs(0);
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300 { // -- local scope
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302 desc.setValidator(fieldValidator);
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304 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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305 jalview.schemabinding.version2.Tree.class, "_treeList", "tree",
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306 org.exolab.castor.xml.NodeType.Element);
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307 handler = new org.exolab.castor.xml.XMLFieldHandler()
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309 public java.lang.Object getValue(java.lang.Object object)
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310 throws IllegalStateException
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312 JalviewModelSequence target = (JalviewModelSequence) object;
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313 return target.getTree();
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316 public void setValue(java.lang.Object object, java.lang.Object value)
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317 throws IllegalStateException, IllegalArgumentException
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321 JalviewModelSequence target = (JalviewModelSequence) object;
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322 target.addTree((jalview.schemabinding.version2.Tree) value);
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323 } catch (java.lang.Exception ex)
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325 throw new IllegalStateException(ex.toString());
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329 public void resetValue(Object object) throws IllegalStateException,
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330 IllegalArgumentException
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334 JalviewModelSequence target = (JalviewModelSequence) object;
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335 target.removeAllTree();
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336 } catch (java.lang.Exception ex)
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338 throw new IllegalStateException(ex.toString());
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342 public java.lang.Object newInstance(java.lang.Object parent)
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344 return new jalview.schemabinding.version2.Tree();
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347 desc.setHandler(handler);
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348 desc.setNameSpaceURI("www.jalview.org");
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349 desc.setMultivalued(true);
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350 addFieldDescriptor(desc);
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352 // -- validation code for: _treeList
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353 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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354 fieldValidator.setMinOccurs(0);
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355 { // -- local scope
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357 desc.setValidator(fieldValidator);
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358 // -- _featureSettings
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359 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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360 jalview.schemabinding.version2.FeatureSettings.class,
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361 "_featureSettings", "FeatureSettings",
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362 org.exolab.castor.xml.NodeType.Element);
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363 handler = new org.exolab.castor.xml.XMLFieldHandler()
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365 public java.lang.Object getValue(java.lang.Object object)
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366 throws IllegalStateException
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368 JalviewModelSequence target = (JalviewModelSequence) object;
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369 return target.getFeatureSettings();
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372 public void setValue(java.lang.Object object, java.lang.Object value)
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373 throws IllegalStateException, IllegalArgumentException
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377 JalviewModelSequence target = (JalviewModelSequence) object;
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379 .setFeatureSettings((jalview.schemabinding.version2.FeatureSettings) value);
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380 } catch (java.lang.Exception ex)
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382 throw new IllegalStateException(ex.toString());
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386 public java.lang.Object newInstance(java.lang.Object parent)
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388 return new jalview.schemabinding.version2.FeatureSettings();
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391 desc.setHandler(handler);
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392 desc.setNameSpaceURI("www.jalview.org");
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393 desc.setMultivalued(false);
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394 addFieldDescriptor(desc);
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396 // -- validation code for: _featureSettings
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397 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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398 { // -- local scope
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400 desc.setValidator(fieldValidator);
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408 * Method getAccessMode.
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410 * @return the access mode specified for this class.
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412 public org.exolab.castor.mapping.AccessMode getAccessMode()
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418 * Method getIdentity.
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420 * @return the identity field, null if this class has no identity.
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422 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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424 return super.getIdentity();
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428 * Method getJavaClass.
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430 * @return the Java class represented by this descriptor.
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432 public java.lang.Class getJavaClass()
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434 return jalview.schemabinding.version2.JalviewModelSequence.class;
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438 * Method getNameSpacePrefix.
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440 * @return the namespace prefix to use when marshaling as XML.
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442 public java.lang.String getNameSpacePrefix()
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448 * Method getNameSpaceURI.
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450 * @return the namespace URI used when marshaling and unmarshaling as XML.
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452 public java.lang.String getNameSpaceURI()
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458 * Method getValidator.
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460 * @return a specific validator for the class described by this
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463 public org.exolab.castor.xml.TypeValidator getValidator()
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469 * Method getXMLName.
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471 * @return the XML Name for the Class being described.
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473 public java.lang.String getXMLName()
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479 * Method isElementDefinition.
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481 * @return true if XML schema definition of this Class is that of a global
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482 * element or element with anonymous type definition.
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484 public boolean isElementDefinition()
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486 return _elementDefinition;
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