src/jalview/schemabinding/version2/descriptors/JalviewModelSequenceDescriptor.java

   1 /*\r
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
   3  * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
   4  * \r
   5  * This program is free software; you can redistribute it and/or\r
   6  * modify it under the terms of the GNU General Public License\r
   7  * as published by the Free Software Foundation; either version 2\r
   8  * of the License, or (at your option) any later version.\r
   9  * \r
  10  * This program is distributed in the hope that it will be useful,\r
  11  * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
  12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
  13  * GNU General Public License for more details.\r
  14  * \r
  15  * You should have received a copy of the GNU General Public License\r
  16  * along with this program; if not, write to the Free Software\r
  17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  18  */\r
  19 package jalview.schemabinding.version2.descriptors;\r
  20 \r
  21   //---------------------------------/\r
  22  //- Imported classes and packages -/\r
  23 //---------------------------------/\r
  24 \r
  25 import jalview.schemabinding.version2.JalviewModelSequence;\r
  26 \r
  27 /**\r
  28  * Class JalviewModelSequenceDescriptor.\r
  29  * \r
  30  * @version $Revision$ $Date$\r
  31  */\r
  32 public class JalviewModelSequenceDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
  33 \r
  34 \r
  35       //--------------------------/\r
  36      //- Class/Member Variables -/\r
  37     //--------------------------/\r
  38 \r
  39     /**\r
  40      * Field _elementDefinition.\r
  41      */\r
  42     private boolean _elementDefinition;\r
  43 \r
  44     /**\r
  45      * Field _nsPrefix.\r
  46      */\r
  47     private java.lang.String _nsPrefix;\r
  48 \r
  49     /**\r
  50      * Field _nsURI.\r
  51      */\r
  52     private java.lang.String _nsURI;\r
  53 \r
  54     /**\r
  55      * Field _xmlName.\r
  56      */\r
  57     private java.lang.String _xmlName;\r
  58 \r
  59 \r
  60       //----------------/\r
  61      //- Constructors -/\r
  62     //----------------/\r
  63 \r
  64     public JalviewModelSequenceDescriptor() {\r
  65         super();\r
  66         _nsURI = "www.jalview.org";\r
  67         _elementDefinition = false;\r
  68         \r
  69         //-- set grouping compositor\r
  70         setCompositorAsSequence();\r
  71         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
  72         org.exolab.castor.mapping.FieldHandler             handler        = null;\r
  73         org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
  74         //-- initialize attribute descriptors\r
  75         \r
  76         //-- initialize element descriptors\r
  77         \r
  78         //-- _JSeqList\r
  79         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.JSeq.class, "_JSeqList", "JSeq", org.exolab.castor.xml.NodeType.Element);\r
  80         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
  81             public java.lang.Object getValue( java.lang.Object object ) \r
  82                 throws IllegalStateException\r
  83             {\r
  84                 JalviewModelSequence target = (JalviewModelSequence) object;\r
  85                 return target.getJSeq();\r
  86             }\r
  87             public void setValue( java.lang.Object object, java.lang.Object value) \r
  88                 throws IllegalStateException, IllegalArgumentException\r
  89             {\r
  90                 try {\r
  91                     JalviewModelSequence target = (JalviewModelSequence) object;\r
  92                     target.addJSeq( (jalview.schemabinding.version2.JSeq) value);\r
  93                 } catch (java.lang.Exception ex) {\r
  94                     throw new IllegalStateException(ex.toString());\r
  95                 }\r
  96             }\r
  97             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
  98                 try {\r
  99                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 100                     target.removeAllJSeq();\r
 101                 } catch (java.lang.Exception ex) {\r
 102                     throw new IllegalStateException(ex.toString());\r
 103                 }\r
 104             }\r
 105             public java.lang.Object newInstance(java.lang.Object parent) {\r
 106                 return new jalview.schemabinding.version2.JSeq();\r
 107             }\r
 108         };\r
 109         desc.setHandler(handler);\r
 110         desc.setNameSpaceURI("www.jalview.org");\r
 111         desc.setRequired(true);\r
 112         desc.setMultivalued(true);\r
 113         addFieldDescriptor(desc);\r
 114         \r
 115         //-- validation code for: _JSeqList\r
 116         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 117         fieldValidator.setMinOccurs(1);\r
 118         { //-- local scope\r
 119         }\r
 120         desc.setValidator(fieldValidator);\r
 121         //-- _JGroupList\r
 122         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.JGroup.class, "_JGroupList", "JGroup", org.exolab.castor.xml.NodeType.Element);\r
 123         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 124             public java.lang.Object getValue( java.lang.Object object ) \r
 125                 throws IllegalStateException\r
 126             {\r
 127                 JalviewModelSequence target = (JalviewModelSequence) object;\r
 128                 return target.getJGroup();\r
 129             }\r
 130             public void setValue( java.lang.Object object, java.lang.Object value) \r
 131                 throws IllegalStateException, IllegalArgumentException\r
 132             {\r
 133                 try {\r
 134                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 135                     target.addJGroup( (jalview.schemabinding.version2.JGroup) value);\r
 136                 } catch (java.lang.Exception ex) {\r
 137                     throw new IllegalStateException(ex.toString());\r
 138                 }\r
 139             }\r
 140             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 141                 try {\r
 142                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 143                     target.removeAllJGroup();\r
 144                 } catch (java.lang.Exception ex) {\r
 145                     throw new IllegalStateException(ex.toString());\r
 146                 }\r
 147             }\r
 148             public java.lang.Object newInstance(java.lang.Object parent) {\r
 149                 return new jalview.schemabinding.version2.JGroup();\r
 150             }\r
 151         };\r
 152         desc.setHandler(handler);\r
 153         desc.setNameSpaceURI("www.jalview.org");\r
 154         desc.setMultivalued(true);\r
 155         addFieldDescriptor(desc);\r
 156         \r
 157         //-- validation code for: _JGroupList\r
 158         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 159         fieldValidator.setMinOccurs(0);\r
 160         { //-- local scope\r
 161         }\r
 162         desc.setValidator(fieldValidator);\r
 163         //-- _viewportList\r
 164         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Viewport.class, "_viewportList", "Viewport", org.exolab.castor.xml.NodeType.Element);\r
 165         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 166             public java.lang.Object getValue( java.lang.Object object ) \r
 167                 throws IllegalStateException\r
 168             {\r
 169                 JalviewModelSequence target = (JalviewModelSequence) object;\r
 170                 return target.getViewport();\r
 171             }\r
 172             public void setValue( java.lang.Object object, java.lang.Object value) \r
 173                 throws IllegalStateException, IllegalArgumentException\r
 174             {\r
 175                 try {\r
 176                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 177                     target.addViewport( (jalview.schemabinding.version2.Viewport) value);\r
 178                 } catch (java.lang.Exception ex) {\r
 179                     throw new IllegalStateException(ex.toString());\r
 180                 }\r
 181             }\r
 182             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 183                 try {\r
 184                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 185                     target.removeAllViewport();\r
 186                 } catch (java.lang.Exception ex) {\r
 187                     throw new IllegalStateException(ex.toString());\r
 188                 }\r
 189             }\r
 190             public java.lang.Object newInstance(java.lang.Object parent) {\r
 191                 return new jalview.schemabinding.version2.Viewport();\r
 192             }\r
 193         };\r
 194         desc.setHandler(handler);\r
 195         desc.setNameSpaceURI("www.jalview.org");\r
 196         desc.setRequired(true);\r
 197         desc.setMultivalued(true);\r
 198         addFieldDescriptor(desc);\r
 199         \r
 200         //-- validation code for: _viewportList\r
 201         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 202         fieldValidator.setMinOccurs(1);\r
 203         { //-- local scope\r
 204         }\r
 205         desc.setValidator(fieldValidator);\r
 206         //-- _userColoursList\r
 207         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.UserColours.class, "_userColoursList", "UserColours", org.exolab.castor.xml.NodeType.Element);\r
 208         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 209             public java.lang.Object getValue( java.lang.Object object ) \r
 210                 throws IllegalStateException\r
 211             {\r
 212                 JalviewModelSequence target = (JalviewModelSequence) object;\r
 213                 return target.getUserColours();\r
 214             }\r
 215             public void setValue( java.lang.Object object, java.lang.Object value) \r
 216                 throws IllegalStateException, IllegalArgumentException\r
 217             {\r
 218                 try {\r
 219                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 220                     target.addUserColours( (jalview.schemabinding.version2.UserColours) value);\r
 221                 } catch (java.lang.Exception ex) {\r
 222                     throw new IllegalStateException(ex.toString());\r
 223                 }\r
 224             }\r
 225             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 226                 try {\r
 227                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 228                     target.removeAllUserColours();\r
 229                 } catch (java.lang.Exception ex) {\r
 230                     throw new IllegalStateException(ex.toString());\r
 231                 }\r
 232             }\r
 233             public java.lang.Object newInstance(java.lang.Object parent) {\r
 234                 return new jalview.schemabinding.version2.UserColours();\r
 235             }\r
 236         };\r
 237         desc.setHandler(handler);\r
 238         desc.setNameSpaceURI("www.jalview.org");\r
 239         desc.setMultivalued(true);\r
 240         addFieldDescriptor(desc);\r
 241         \r
 242         //-- validation code for: _userColoursList\r
 243         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 244         fieldValidator.setMinOccurs(0);\r
 245         { //-- local scope\r
 246         }\r
 247         desc.setValidator(fieldValidator);\r
 248         //-- _treeList\r
 249         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Tree.class, "_treeList", "tree", org.exolab.castor.xml.NodeType.Element);\r
 250         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 251             public java.lang.Object getValue( java.lang.Object object ) \r
 252                 throws IllegalStateException\r
 253             {\r
 254                 JalviewModelSequence target = (JalviewModelSequence) object;\r
 255                 return target.getTree();\r
 256             }\r
 257             public void setValue( java.lang.Object object, java.lang.Object value) \r
 258                 throws IllegalStateException, IllegalArgumentException\r
 259             {\r
 260                 try {\r
 261                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 262                     target.addTree( (jalview.schemabinding.version2.Tree) value);\r
 263                 } catch (java.lang.Exception ex) {\r
 264                     throw new IllegalStateException(ex.toString());\r
 265                 }\r
 266             }\r
 267             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 268                 try {\r
 269                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 270                     target.removeAllTree();\r
 271                 } catch (java.lang.Exception ex) {\r
 272                     throw new IllegalStateException(ex.toString());\r
 273                 }\r
 274             }\r
 275             public java.lang.Object newInstance(java.lang.Object parent) {\r
 276                 return new jalview.schemabinding.version2.Tree();\r
 277             }\r
 278         };\r
 279         desc.setHandler(handler);\r
 280         desc.setNameSpaceURI("www.jalview.org");\r
 281         desc.setMultivalued(true);\r
 282         addFieldDescriptor(desc);\r
 283         \r
 284         //-- validation code for: _treeList\r
 285         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 286         fieldValidator.setMinOccurs(0);\r
 287         { //-- local scope\r
 288         }\r
 289         desc.setValidator(fieldValidator);\r
 290         //-- _featureSettings\r
 291         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.FeatureSettings.class, "_featureSettings", "FeatureSettings", org.exolab.castor.xml.NodeType.Element);\r
 292         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 293             public java.lang.Object getValue( java.lang.Object object ) \r
 294                 throws IllegalStateException\r
 295             {\r
 296                 JalviewModelSequence target = (JalviewModelSequence) object;\r
 297                 return target.getFeatureSettings();\r
 298             }\r
 299             public void setValue( java.lang.Object object, java.lang.Object value) \r
 300                 throws IllegalStateException, IllegalArgumentException\r
 301             {\r
 302                 try {\r
 303                     JalviewModelSequence target = (JalviewModelSequence) object;\r
 304                     target.setFeatureSettings( (jalview.schemabinding.version2.FeatureSettings) value);\r
 305                 } catch (java.lang.Exception ex) {\r
 306                     throw new IllegalStateException(ex.toString());\r
 307                 }\r
 308             }\r
 309             public java.lang.Object newInstance(java.lang.Object parent) {\r
 310                 return new jalview.schemabinding.version2.FeatureSettings();\r
 311             }\r
 312         };\r
 313         desc.setHandler(handler);\r
 314         desc.setNameSpaceURI("www.jalview.org");\r
 315         desc.setMultivalued(false);\r
 316         addFieldDescriptor(desc);\r
 317         \r
 318         //-- validation code for: _featureSettings\r
 319         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 320         { //-- local scope\r
 321         }\r
 322         desc.setValidator(fieldValidator);\r
 323     }\r
 324 \r
 325 \r
 326       //-----------/\r
 327      //- Methods -/\r
 328     //-----------/\r
 329 \r
 330     /**\r
 331      * Method getAccessMode.\r
 332      * \r
 333      * @return the access mode specified for this class.\r
 334      */\r
 335     public org.exolab.castor.mapping.AccessMode getAccessMode(\r
 336     ) {\r
 337         return null;\r
 338     }\r
 339 \r
 340     /**\r
 341      * Method getIdentity.\r
 342      * \r
 343      * @return the identity field, null if this class has no\r
 344      * identity.\r
 345      */\r
 346     public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
 347     ) {\r
 348         return super.getIdentity();\r
 349     }\r
 350 \r
 351     /**\r
 352      * Method getJavaClass.\r
 353      * \r
 354      * @return the Java class represented by this descriptor.\r
 355      */\r
 356     public java.lang.Class getJavaClass(\r
 357     ) {\r
 358         return jalview.schemabinding.version2.JalviewModelSequence.class;\r
 359     }\r
 360 \r
 361     /**\r
 362      * Method getNameSpacePrefix.\r
 363      * \r
 364      * @return the namespace prefix to use when marshaling as XML.\r
 365      */\r
 366     public java.lang.String getNameSpacePrefix(\r
 367     ) {\r
 368         return _nsPrefix;\r
 369     }\r
 370 \r
 371     /**\r
 372      * Method getNameSpaceURI.\r
 373      * \r
 374      * @return the namespace URI used when marshaling and\r
 375      * unmarshaling as XML.\r
 376      */\r
 377     public java.lang.String getNameSpaceURI(\r
 378     ) {\r
 379         return _nsURI;\r
 380     }\r
 381 \r
 382     /**\r
 383      * Method getValidator.\r
 384      * \r
 385      * @return a specific validator for the class described by this\r
 386      * ClassDescriptor.\r
 387      */\r
 388     public org.exolab.castor.xml.TypeValidator getValidator(\r
 389     ) {\r
 390         return this;\r
 391     }\r
 392 \r
 393     /**\r
 394      * Method getXMLName.\r
 395      * \r
 396      * @return the XML Name for the Class being described.\r
 397      */\r
 398     public java.lang.String getXMLName(\r
 399     ) {\r
 400         return _xmlName;\r
 401     }\r
 402 \r
 403     /**\r
 404      * Method isElementDefinition.\r
 405      * \r
 406      * @return true if XML schema definition of this Class is that\r
 407      * of a global\r
 408      * element or element with anonymous type definition.\r
 409      */\r
 410     public boolean isElementDefinition(\r
 411     ) {\r
 412         return _elementDefinition;\r
 413     }\r
 414 \r
 415 }\r