<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" targetNamespace="www.jalview.org/colours">
<xs:complexType name="JalviewUserColours">
<xs:sequence>
- <xs:element name="colour" maxOccurs="unbounded">
+ <xs:element name="Version" maxOccurs="1" minOccurs="0" type="xs:string">\r <xs:annotation>
+ <xs:documentation>
+ Jalview colour scheme document version.
+ </xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element name="colour" maxOccurs="unbounded" minOccurs="0">
<xs:complexType>
<xs:attribute name="Name" type="xs:string"/>
<xs:attribute name="RGB" type="xs:string" use="required"/>
+ <xs:attribute name="minRGB" type="xs:string" use="optional"/>
+ <xs:attribute name="threshType" type="xs:string" use="optional">
+ <xs:annotation>
+ <xs:documentation>loosely specified enumeration: NONE,ABOVE, or BELOW</xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ <xs:attribute name="threshold" type="xs:float" use="optional"/>
+ <xs:attribute name="max" type="xs:float" use="optional"/>
+ <xs:attribute name="min" type="xs:float" use="optional"/>
+ <xs:attribute name="colourByLabel" type="xs:boolean" use="optional"/>
+ <xs:attribute name="autoScale" type="xs:boolean" use="optional"/>
</xs:complexType>
</xs:element>
</xs:sequence>
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
*/
private java.lang.String _RGB;
+ /**
+ * Field _minRGB.
+ */
+ private java.lang.String _minRGB;
+
+ /**
+ * loosely specified enumeration: NONE,ABOVE, or BELOW
+ */
+ private java.lang.String _threshType;
+
+ /**
+ * Field _threshold.
+ */
+ private float _threshold;
+
+ /**
+ * keeps track of state for field: _threshold
+ */
+ private boolean _has_threshold;
+
+ /**
+ * Field _max.
+ */
+ private float _max;
+
+ /**
+ * keeps track of state for field: _max
+ */
+ private boolean _has_max;
+
+ /**
+ * Field _min.
+ */
+ private float _min;
+
+ /**
+ * keeps track of state for field: _min
+ */
+ private boolean _has_min;
+
+ /**
+ * Field _colourByLabel.
+ */
+ private boolean _colourByLabel;
+
+ /**
+ * keeps track of state for field: _colourByLabel
+ */
+ private boolean _has_colourByLabel;
+
+ /**
+ * Field _autoScale.
+ */
+ private boolean _autoScale;
+
+ /**
+ * keeps track of state for field: _autoScale
+ */
+ private boolean _has_autoScale;
+
//----------------/
//- Constructors -/
//-----------/
/**
+ */
+ public void deleteAutoScale(
+ ) {
+ this._has_autoScale= false;
+ }
+
+ /**
+ */
+ public void deleteColourByLabel(
+ ) {
+ this._has_colourByLabel= false;
+ }
+
+ /**
+ */
+ public void deleteMax(
+ ) {
+ this._has_max= false;
+ }
+
+ /**
+ */
+ public void deleteMin(
+ ) {
+ this._has_min= false;
+ }
+
+ /**
+ */
+ public void deleteThreshold(
+ ) {
+ this._has_threshold= false;
+ }
+
+ /**
+ * Returns the value of field 'autoScale'.
+ *
+ * @return the value of field 'AutoScale'.
+ */
+ public boolean getAutoScale(
+ ) {
+ return this._autoScale;
+ }
+
+ /**
+ * Returns the value of field 'colourByLabel'.
+ *
+ * @return the value of field 'ColourByLabel'.
+ */
+ public boolean getColourByLabel(
+ ) {
+ return this._colourByLabel;
+ }
+
+ /**
+ * Returns the value of field 'max'.
+ *
+ * @return the value of field 'Max'.
+ */
+ public float getMax(
+ ) {
+ return this._max;
+ }
+
+ /**
+ * Returns the value of field 'min'.
+ *
+ * @return the value of field 'Min'.
+ */
+ public float getMin(
+ ) {
+ return this._min;
+ }
+
+ /**
+ * Returns the value of field 'minRGB'.
+ *
+ * @return the value of field 'MinRGB'.
+ */
+ public java.lang.String getMinRGB(
+ ) {
+ return this._minRGB;
+ }
+
+ /**
* Returns the value of field 'name'.
*
* @return the value of field 'Name'.
}
/**
+ * Returns the value of field 'threshType'. The field
+ * 'threshType' has the following description: loosely
+ * specified enumeration: NONE,ABOVE, or BELOW
+ *
+ * @return the value of field 'ThreshType'.
+ */
+ public java.lang.String getThreshType(
+ ) {
+ return this._threshType;
+ }
+
+ /**
+ * Returns the value of field 'threshold'.
+ *
+ * @return the value of field 'Threshold'.
+ */
+ public float getThreshold(
+ ) {
+ return this._threshold;
+ }
+
+ /**
+ * Method hasAutoScale.
+ *
+ * @return true if at least one AutoScale has been added
+ */
+ public boolean hasAutoScale(
+ ) {
+ return this._has_autoScale;
+ }
+
+ /**
+ * Method hasColourByLabel.
+ *
+ * @return true if at least one ColourByLabel has been added
+ */
+ public boolean hasColourByLabel(
+ ) {
+ return this._has_colourByLabel;
+ }
+
+ /**
+ * Method hasMax.
+ *
+ * @return true if at least one Max has been added
+ */
+ public boolean hasMax(
+ ) {
+ return this._has_max;
+ }
+
+ /**
+ * Method hasMin.
+ *
+ * @return true if at least one Min has been added
+ */
+ public boolean hasMin(
+ ) {
+ return this._has_min;
+ }
+
+ /**
+ * Method hasThreshold.
+ *
+ * @return true if at least one Threshold has been added
+ */
+ public boolean hasThreshold(
+ ) {
+ return this._has_threshold;
+ }
+
+ /**
+ * Returns the value of field 'autoScale'.
+ *
+ * @return the value of field 'AutoScale'.
+ */
+ public boolean isAutoScale(
+ ) {
+ return this._autoScale;
+ }
+
+ /**
+ * Returns the value of field 'colourByLabel'.
+ *
+ * @return the value of field 'ColourByLabel'.
+ */
+ public boolean isColourByLabel(
+ ) {
+ return this._colourByLabel;
+ }
+
+ /**
* Method isValid.
*
* @return true if this object is valid according to the schema
}
/**
+ * Sets the value of field 'autoScale'.
+ *
+ * @param autoScale the value of field 'autoScale'.
+ */
+ public void setAutoScale(
+ final boolean autoScale) {
+ this._autoScale = autoScale;
+ this._has_autoScale = true;
+ }
+
+ /**
+ * Sets the value of field 'colourByLabel'.
+ *
+ * @param colourByLabel the value of field 'colourByLabel'.
+ */
+ public void setColourByLabel(
+ final boolean colourByLabel) {
+ this._colourByLabel = colourByLabel;
+ this._has_colourByLabel = true;
+ }
+
+ /**
+ * Sets the value of field 'max'.
+ *
+ * @param max the value of field 'max'.
+ */
+ public void setMax(
+ final float max) {
+ this._max = max;
+ this._has_max = true;
+ }
+
+ /**
+ * Sets the value of field 'min'.
+ *
+ * @param min the value of field 'min'.
+ */
+ public void setMin(
+ final float min) {
+ this._min = min;
+ this._has_min = true;
+ }
+
+ /**
+ * Sets the value of field 'minRGB'.
+ *
+ * @param minRGB the value of field 'minRGB'.
+ */
+ public void setMinRGB(
+ final java.lang.String minRGB) {
+ this._minRGB = minRGB;
+ }
+
+ /**
* Sets the value of field 'name'.
*
* @param name the value of field 'name'.
}
/**
+ * Sets the value of field 'threshType'. The field 'threshType'
+ * has the following description: loosely specified
+ * enumeration: NONE,ABOVE, or BELOW
+ *
+ * @param threshType the value of field 'threshType'.
+ */
+ public void setThreshType(
+ final java.lang.String threshType) {
+ this._threshType = threshType;
+ }
+
+ /**
+ * Sets the value of field 'threshold'.
+ *
+ * @param threshold the value of field 'threshold'.
+ */
+ public void setThreshold(
+ final float threshold) {
+ this._threshold = threshold;
+ this._has_threshold = true;
+ }
+
+ /**
* Method unmarshal.
*
* @param reader
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
private java.lang.String _schemeName;
/**
+ * Jalview colour scheme document version.
+ *
+ */
+ private java.lang.String _version;
+
+ /**
* Field _colourList.
*/
private java.util.Vector _colourList;
}
/**
+ * Returns the value of field 'version'. The field 'version'
+ * has the following description: Jalview colour scheme
+ * document version.
+ *
+ *
+ * @return the value of field 'Version'.
+ */
+ public java.lang.String getVersion(
+ ) {
+ return this._version;
+ }
+
+ /**
* Method isValid.
*
* @return true if this object is valid according to the schema
}
/**
+ * Sets the value of field 'version'. The field 'version' has
+ * the following description: Jalview colour scheme document
+ * version.
+ *
+ *
+ * @param version the value of field 'version'.
+ */
+ public void setVersion(
+ final java.lang.String version) {
+ this._version = version;
+ }
+
+ /**
* Method unmarshal.
*
* @param reader
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
-#Tue Mar 31 17:21:18 BST 2009\r
+#Fri Apr 02 15:31:06 BST 2010\r
jalview.schemabinding.version2.ThresholdLine=jalview.schemabinding.version2.descriptors.ThresholdLineDescriptor\r
jalview.schemabinding.version2.SequenceSetProperties=jalview.schemabinding.version2.descriptors.SequenceSetPropertiesDescriptor\r
jalview.schemabinding.version2.StructureState=jalview.schemabinding.version2.descriptors.StructureStateDescriptor\r
jalview.schemabinding.version2.PdbentryItem=jalview.schemabinding.version2.descriptors.PdbentryItemDescriptor\r
jalview.schemabinding.version2.FeatureSettings=jalview.schemabinding.version2.descriptors.FeatureSettingsDescriptor\r
jalview.schemabinding.version2.JGroup=jalview.schemabinding.version2.descriptors.JGroupDescriptor\r
-jalview.schemabinding.version2.VamsasModel=jalview.schemabinding.version2.descriptors.VamsasModelDescriptor\r
-jalview.schemabinding.version2.JalviewUserColours=jalview.schemabinding.version2.descriptors.JalviewUserColoursDescriptor\r
jalview.schemabinding.version2.MapListTo=jalview.schemabinding.version2.descriptors.MapListToDescriptor\r
+jalview.schemabinding.version2.JalviewUserColours=jalview.schemabinding.version2.descriptors.JalviewUserColoursDescriptor\r
+jalview.schemabinding.version2.VamsasModel=jalview.schemabinding.version2.descriptors.VamsasModelDescriptor\r
jalview.schemabinding.version2.Pdbentry=jalview.schemabinding.version2.descriptors.PdbentryDescriptor\r
jalview.schemabinding.version2.HiddenColumns=jalview.schemabinding.version2.descriptors.HiddenColumnsDescriptor\r
-jalview.schemabinding.version2.Features=jalview.schemabinding.version2.descriptors.FeaturesDescriptor\r
jalview.schemabinding.version2.DseqFor=jalview.schemabinding.version2.descriptors.DseqForDescriptor\r
+jalview.schemabinding.version2.Features=jalview.schemabinding.version2.descriptors.FeaturesDescriptor\r
jalview.schemabinding.version2.VAMSAS=jalview.schemabinding.version2.descriptors.VAMSASDescriptor\r
jalview.schemabinding.version2.MappingChoiceItem=jalview.schemabinding.version2.descriptors.MappingChoiceItemDescriptor\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
*/\r
private java.lang.String _RGB;\r
\r
+ /**\r
+ * Field _minRGB.\r
+ */\r
+ private java.lang.String _minRGB;\r
+\r
+ /**\r
+ * loosely specified enumeration: NONE,ABOVE, or BELOW\r
+ */\r
+ private java.lang.String _threshType;\r
+\r
+ /**\r
+ * Field _threshold.\r
+ */\r
+ private float _threshold;\r
+\r
+ /**\r
+ * keeps track of state for field: _threshold\r
+ */\r
+ private boolean _has_threshold;\r
+\r
+ /**\r
+ * Field _max.\r
+ */\r
+ private float _max;\r
+\r
+ /**\r
+ * keeps track of state for field: _max\r
+ */\r
+ private boolean _has_max;\r
+\r
+ /**\r
+ * Field _min.\r
+ */\r
+ private float _min;\r
+\r
+ /**\r
+ * keeps track of state for field: _min\r
+ */\r
+ private boolean _has_min;\r
+\r
+ /**\r
+ * Field _colourByLabel.\r
+ */\r
+ private boolean _colourByLabel;\r
+\r
+ /**\r
+ * keeps track of state for field: _colourByLabel\r
+ */\r
+ private boolean _has_colourByLabel;\r
+\r
+ /**\r
+ * Field _autoScale.\r
+ */\r
+ private boolean _autoScale;\r
+\r
+ /**\r
+ * keeps track of state for field: _autoScale\r
+ */\r
+ private boolean _has_autoScale;\r
+\r
\r
//----------------/\r
//- Constructors -/\r
//-----------/\r
\r
/**\r
+ */\r
+ public void deleteAutoScale(\r
+ ) {\r
+ this._has_autoScale= false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteColourByLabel(\r
+ ) {\r
+ this._has_colourByLabel= false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteMax(\r
+ ) {\r
+ this._has_max= false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteMin(\r
+ ) {\r
+ this._has_min= false;\r
+ }\r
+\r
+ /**\r
+ */\r
+ public void deleteThreshold(\r
+ ) {\r
+ this._has_threshold= false;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'autoScale'.\r
+ * \r
+ * @return the value of field 'AutoScale'.\r
+ */\r
+ public boolean getAutoScale(\r
+ ) {\r
+ return this._autoScale;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'colourByLabel'.\r
+ * \r
+ * @return the value of field 'ColourByLabel'.\r
+ */\r
+ public boolean getColourByLabel(\r
+ ) {\r
+ return this._colourByLabel;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'max'.\r
+ * \r
+ * @return the value of field 'Max'.\r
+ */\r
+ public float getMax(\r
+ ) {\r
+ return this._max;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'min'.\r
+ * \r
+ * @return the value of field 'Min'.\r
+ */\r
+ public float getMin(\r
+ ) {\r
+ return this._min;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'minRGB'.\r
+ * \r
+ * @return the value of field 'MinRGB'.\r
+ */\r
+ public java.lang.String getMinRGB(\r
+ ) {\r
+ return this._minRGB;\r
+ }\r
+\r
+ /**\r
* Returns the value of field 'name'.\r
* \r
* @return the value of field 'Name'.\r
}\r
\r
/**\r
+ * Returns the value of field 'threshType'. The field\r
+ * 'threshType' has the following description: loosely\r
+ * specified enumeration: NONE,ABOVE, or BELOW\r
+ * \r
+ * @return the value of field 'ThreshType'.\r
+ */\r
+ public java.lang.String getThreshType(\r
+ ) {\r
+ return this._threshType;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'threshold'.\r
+ * \r
+ * @return the value of field 'Threshold'.\r
+ */\r
+ public float getThreshold(\r
+ ) {\r
+ return this._threshold;\r
+ }\r
+\r
+ /**\r
+ * Method hasAutoScale.\r
+ * \r
+ * @return true if at least one AutoScale has been added\r
+ */\r
+ public boolean hasAutoScale(\r
+ ) {\r
+ return this._has_autoScale;\r
+ }\r
+\r
+ /**\r
+ * Method hasColourByLabel.\r
+ * \r
+ * @return true if at least one ColourByLabel has been added\r
+ */\r
+ public boolean hasColourByLabel(\r
+ ) {\r
+ return this._has_colourByLabel;\r
+ }\r
+\r
+ /**\r
+ * Method hasMax.\r
+ * \r
+ * @return true if at least one Max has been added\r
+ */\r
+ public boolean hasMax(\r
+ ) {\r
+ return this._has_max;\r
+ }\r
+\r
+ /**\r
+ * Method hasMin.\r
+ * \r
+ * @return true if at least one Min has been added\r
+ */\r
+ public boolean hasMin(\r
+ ) {\r
+ return this._has_min;\r
+ }\r
+\r
+ /**\r
+ * Method hasThreshold.\r
+ * \r
+ * @return true if at least one Threshold has been added\r
+ */\r
+ public boolean hasThreshold(\r
+ ) {\r
+ return this._has_threshold;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'autoScale'.\r
+ * \r
+ * @return the value of field 'AutoScale'.\r
+ */\r
+ public boolean isAutoScale(\r
+ ) {\r
+ return this._autoScale;\r
+ }\r
+\r
+ /**\r
+ * Returns the value of field 'colourByLabel'.\r
+ * \r
+ * @return the value of field 'ColourByLabel'.\r
+ */\r
+ public boolean isColourByLabel(\r
+ ) {\r
+ return this._colourByLabel;\r
+ }\r
+\r
+ /**\r
* Method isValid.\r
* \r
* @return true if this object is valid according to the schema\r
}\r
\r
/**\r
+ * Sets the value of field 'autoScale'.\r
+ * \r
+ * @param autoScale the value of field 'autoScale'.\r
+ */\r
+ public void setAutoScale(\r
+ final boolean autoScale) {\r
+ this._autoScale = autoScale;\r
+ this._has_autoScale = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'colourByLabel'.\r
+ * \r
+ * @param colourByLabel the value of field 'colourByLabel'.\r
+ */\r
+ public void setColourByLabel(\r
+ final boolean colourByLabel) {\r
+ this._colourByLabel = colourByLabel;\r
+ this._has_colourByLabel = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'max'.\r
+ * \r
+ * @param max the value of field 'max'.\r
+ */\r
+ public void setMax(\r
+ final float max) {\r
+ this._max = max;\r
+ this._has_max = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'min'.\r
+ * \r
+ * @param min the value of field 'min'.\r
+ */\r
+ public void setMin(\r
+ final float min) {\r
+ this._min = min;\r
+ this._has_min = true;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'minRGB'.\r
+ * \r
+ * @param minRGB the value of field 'minRGB'.\r
+ */\r
+ public void setMinRGB(\r
+ final java.lang.String minRGB) {\r
+ this._minRGB = minRGB;\r
+ }\r
+\r
+ /**\r
* Sets the value of field 'name'.\r
* \r
* @param name the value of field 'name'.\r
}\r
\r
/**\r
+ * Sets the value of field 'threshType'. The field 'threshType'\r
+ * has the following description: loosely specified\r
+ * enumeration: NONE,ABOVE, or BELOW\r
+ * \r
+ * @param threshType the value of field 'threshType'.\r
+ */\r
+ public void setThreshType(\r
+ final java.lang.String threshType) {\r
+ this._threshType = threshType;\r
+ }\r
+\r
+ /**\r
+ * Sets the value of field 'threshold'.\r
+ * \r
+ * @param threshold the value of field 'threshold'.\r
+ */\r
+ public void setThreshold(\r
+ final float threshold) {\r
+ this._threshold = threshold;\r
+ this._has_threshold = true;\r
+ }\r
+\r
+ /**\r
* Method unmarshal.\r
* \r
* @param reader\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
private java.lang.String _schemeName;\r
\r
/**\r
+ * Jalview colour scheme document version.\r
+ * \r
+ */\r
+ private java.lang.String _version;\r
+\r
+ /**\r
* Field _colourList.\r
*/\r
private java.util.Vector _colourList;\r
}\r
\r
/**\r
+ * Returns the value of field 'version'. The field 'version'\r
+ * has the following description: Jalview colour scheme\r
+ * document version.\r
+ * \r
+ * \r
+ * @return the value of field 'Version'.\r
+ */\r
+ public java.lang.String getVersion(\r
+ ) {\r
+ return this._version;\r
+ }\r
+\r
+ /**\r
* Method isValid.\r
* \r
* @return true if this object is valid according to the schema\r
}\r
\r
/**\r
+ * Sets the value of field 'version'. The field 'version' has\r
+ * the following description: Jalview colour scheme document\r
+ * version.\r
+ * \r
+ * \r
+ * @param version the value of field 'version'.\r
+ */\r
+ public void setVersion(\r
+ final java.lang.String version) {\r
+ this._version = version;\r
+ }\r
+\r
+ /**\r
* Method unmarshal.\r
* \r
* @param reader\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
typeValidator.setWhiteSpace("preserve");\r
}\r
desc.setValidator(fieldValidator);\r
+ //-- _minRGB\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_minRGB", "minRGB", org.exolab.castor.xml.NodeType.Attribute);\r
+ desc.setImmutable(true);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue( java.lang.Object object ) \r
+ throws IllegalStateException\r
+ {\r
+ Colour target = (Colour) object;\r
+ return target.getMinRGB();\r
+ }\r
+ public void setValue( java.lang.Object object, java.lang.Object value) \r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try {\r
+ Colour target = (Colour) object;\r
+ target.setMinRGB( (java.lang.String) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+ \r
+ //-- validation code for: _minRGB\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { //-- local scope\r
+ org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setWhiteSpace("preserve");\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ //-- _threshType\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_threshType", "threshType", org.exolab.castor.xml.NodeType.Attribute);\r
+ desc.setImmutable(true);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue( java.lang.Object object ) \r
+ throws IllegalStateException\r
+ {\r
+ Colour target = (Colour) object;\r
+ return target.getThreshType();\r
+ }\r
+ public void setValue( java.lang.Object object, java.lang.Object value) \r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try {\r
+ Colour target = (Colour) object;\r
+ target.setThreshType( (java.lang.String) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+ \r
+ //-- validation code for: _threshType\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { //-- local scope\r
+ org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setWhiteSpace("preserve");\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ //-- _threshold\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Float.TYPE, "_threshold", "threshold", org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue( java.lang.Object object ) \r
+ throws IllegalStateException\r
+ {\r
+ Colour target = (Colour) object;\r
+ if (!target.hasThreshold()) { return null; }\r
+ return new java.lang.Float(target.getThreshold());\r
+ }\r
+ public void setValue( java.lang.Object object, java.lang.Object value) \r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try {\r
+ Colour target = (Colour) object;\r
+ // if null, use delete method for optional primitives \r
+ if (value == null) {\r
+ target.deleteThreshold();\r
+ return;\r
+ }\r
+ target.setThreshold( ((java.lang.Float) value).floatValue());\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+ \r
+ //-- validation code for: _threshold\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { //-- local scope\r
+ org.exolab.castor.xml.validators.FloatValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.FloatValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setMinInclusive((float) -3.4028235E38);\r
+ typeValidator.setMaxInclusive((float) 3.4028235E38);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ //-- _max\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Float.TYPE, "_max", "max", org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue( java.lang.Object object ) \r
+ throws IllegalStateException\r
+ {\r
+ Colour target = (Colour) object;\r
+ if (!target.hasMax()) { return null; }\r
+ return new java.lang.Float(target.getMax());\r
+ }\r
+ public void setValue( java.lang.Object object, java.lang.Object value) \r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try {\r
+ Colour target = (Colour) object;\r
+ // if null, use delete method for optional primitives \r
+ if (value == null) {\r
+ target.deleteMax();\r
+ return;\r
+ }\r
+ target.setMax( ((java.lang.Float) value).floatValue());\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+ \r
+ //-- validation code for: _max\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { //-- local scope\r
+ org.exolab.castor.xml.validators.FloatValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.FloatValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setMinInclusive((float) -3.4028235E38);\r
+ typeValidator.setMaxInclusive((float) 3.4028235E38);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ //-- _min\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Float.TYPE, "_min", "min", org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue( java.lang.Object object ) \r
+ throws IllegalStateException\r
+ {\r
+ Colour target = (Colour) object;\r
+ if (!target.hasMin()) { return null; }\r
+ return new java.lang.Float(target.getMin());\r
+ }\r
+ public void setValue( java.lang.Object object, java.lang.Object value) \r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try {\r
+ Colour target = (Colour) object;\r
+ // if null, use delete method for optional primitives \r
+ if (value == null) {\r
+ target.deleteMin();\r
+ return;\r
+ }\r
+ target.setMin( ((java.lang.Float) value).floatValue());\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+ \r
+ //-- validation code for: _min\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { //-- local scope\r
+ org.exolab.castor.xml.validators.FloatValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.FloatValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setMinInclusive((float) -3.4028235E38);\r
+ typeValidator.setMaxInclusive((float) 3.4028235E38);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ //-- _colourByLabel\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_colourByLabel", "colourByLabel", org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue( java.lang.Object object ) \r
+ throws IllegalStateException\r
+ {\r
+ Colour target = (Colour) object;\r
+ if (!target.hasColourByLabel()) { return null; }\r
+ return (target.getColourByLabel() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
+ }\r
+ public void setValue( java.lang.Object object, java.lang.Object value) \r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try {\r
+ Colour target = (Colour) object;\r
+ // if null, use delete method for optional primitives \r
+ if (value == null) {\r
+ target.deleteColourByLabel();\r
+ return;\r
+ }\r
+ target.setColourByLabel( ((java.lang.Boolean) value).booleanValue());\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+ \r
+ //-- validation code for: _colourByLabel\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { //-- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ //-- _autoScale\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_autoScale", "autoScale", org.exolab.castor.xml.NodeType.Attribute);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue( java.lang.Object object ) \r
+ throws IllegalStateException\r
+ {\r
+ Colour target = (Colour) object;\r
+ if (!target.hasAutoScale()) { return null; }\r
+ return (target.getAutoScale() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
+ }\r
+ public void setValue( java.lang.Object object, java.lang.Object value) \r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try {\r
+ Colour target = (Colour) object;\r
+ // if null, use delete method for optional primitives \r
+ if (value == null) {\r
+ target.deleteAutoScale();\r
+ return;\r
+ }\r
+ target.setAutoScale( ((java.lang.Boolean) value).booleanValue());\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+ \r
+ //-- validation code for: _autoScale\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { //-- local scope\r
+ org.exolab.castor.xml.validators.BooleanValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ }\r
+ desc.setValidator(fieldValidator);\r
//-- initialize element descriptors\r
\r
}\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
//- Imported classes and packages -/\r
//---------------------------------/\r
\r
-import jalview.schemabinding.version2.Colour;\r
import jalview.schemabinding.version2.JalviewUserColours;\r
+import jalview.schemabinding.version2.Colour;\r
\r
/**\r
* Class JalviewUserColoursDescriptor.\r
desc.setValidator(fieldValidator);\r
//-- initialize element descriptors\r
\r
+ //-- _version\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_version", "Version", org.exolab.castor.xml.NodeType.Element);\r
+ desc.setImmutable(true);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+ public java.lang.Object getValue( java.lang.Object object ) \r
+ throws IllegalStateException\r
+ {\r
+ JalviewUserColours target = (JalviewUserColours) object;\r
+ return target.getVersion();\r
+ }\r
+ public void setValue( java.lang.Object object, java.lang.Object value) \r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try {\r
+ JalviewUserColours target = (JalviewUserColours) object;\r
+ target.setVersion( (java.lang.String) value);\r
+ } catch (java.lang.Exception ex) {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
+ public java.lang.Object newInstance(java.lang.Object parent) {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+ \r
+ //-- validation code for: _version\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { //-- local scope\r
+ org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setWhiteSpace("preserve");\r
+ }\r
+ desc.setValidator(fieldValidator);\r
//-- _colourList\r
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(Colour.class, "_colourList", "colour", org.exolab.castor.xml.NodeType.Element);\r
handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
}\r
};\r
desc.setHandler(handler);\r
- desc.setRequired(true);\r
desc.setMultivalued(true);\r
addFieldDescriptor(desc);\r
\r
//-- validation code for: _colourList\r
fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
+ fieldValidator.setMinOccurs(0);\r
{ //-- local scope\r
}\r
desc.setValidator(fieldValidator);\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
* Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
* \r
* This program is free software; you can redistribute it and/or\r
git://source.jalview.org / jalview.git / commitdiff