1 package jalview.datamodel;
3 import static org.testng.Assert.assertEquals;
5 import org.testng.annotations.Test;
7 public class AlignmentViewTest
9 @Test(groups = { "Functional" })
10 public void testGetVisibleAlignmentGapChar()
12 SeqCigar ss = new SeqCigar(new Sequence("One", "A..CDE"));
13 CigarArray ca = new CigarArray(new CigarSimple[] { ss });
14 AlignmentView av = new AlignmentView(ca);
15 String dots = av.getSequenceStrings('.')[0];
16 assertEquals(dots, "A..CDE");
17 String dollars = av.getSequenceStrings('$')[0];
18 assertEquals(dollars, "A$$CDE");
19 assertEquals(av.getVisibleAlignment('$').getSequenceAt(0)
20 .getSequenceAsString(), "A$$CDE");