public int[] getMappedPositions(int begin, int end)
{
MapList map = mapping.getMap();
- return mapping.to == featureSequence ? map.locateInFrom(begin, end)
- : map.locateInTo(begin, end);
+ return mapping.to == featureSequence ? map.getOverlapsInFrom(begin, end)
+ : map.getOverlapsInTo(begin, end);
}
/**