import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertNull;
-import org.testng.annotations.Test;
+
import jalview.util.MapList;
import java.util.Arrays;
+import org.testng.annotations.Test;
+
public class AlignedCodonFrameTest
{
/**
* Test the method that locates the first aligned sequence that has a mapping.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testFindAlignedSequence()
{
AlignmentI cdna = new Alignment(new SequenceI[]
/**
* Test the method that locates the mapped codon for a protein position.
*/
- @Test
+ @Test(groups ={ "Functional" })
public void testGetMappedRegion()
{
// introns lower case, exons upper case
assertNull(acf.getMappedRegion(seq1, aseq2, 1));
}
- @Test
+ @Test(groups ={ "Functional" })
public void testGetMappedCodon()
{
final Sequence seq1 = new Sequence("Seq1", "c-G-TA-gC-gT-T");