JAL-1805 test envirionment separation
authortcofoegbu <tcnofoegbu@dundee.ac.uk>
Tue, 7 Jul 2015 14:40:54 +0000 (15:40 +0100)
committertcofoegbu <tcnofoegbu@dundee.ac.uk>
Tue, 7 Jul 2015 14:40:54 +0000 (15:40 +0100)
commitab22918ab8fc67d30dad1fb1ae0f37e51f49df95
tree446eaf96887b38c5f8d858407b07f0b3433917cd
parent48510d15aac939c20aa9db69f9ab8e948266c1cb
JAL-1805 test envirionment separation
97 files changed:
src/jalview/gui/AnnotationPanel.java
src/jalview/jbgui/GAlignFrame.java
src/jalview/renderer/AnnotationRenderer.java
test/MCview/AtomTest.java
test/MCview/BondTest.java
test/MCview/PDBChainTest.java
test/MCview/PDBfileTest.java
test/MCview/ResidueTest.java
test/com/stevesoft/pat/RegexWriterTest.java
test/jalview/analysis/AAFrequencyTest.java
test/jalview/analysis/AlignSeqTest.java
test/jalview/analysis/AlignmentAnnotationUtilsTest.java
test/jalview/analysis/AlignmentUtilsTests.java
test/jalview/analysis/AnnotationSorterTest.java
test/jalview/analysis/CodingUtilsTest.java
test/jalview/analysis/CrossRefTest.java
test/jalview/analysis/DnaTest.java
test/jalview/analysis/GroupingTest.java
test/jalview/analysis/ParsePropertiesTest.java
test/jalview/analysis/RnaTest.java
test/jalview/analysis/TestAlignSeq.java
test/jalview/analysis/scoremodels/FeatureScoreModelTest.java
test/jalview/bin/CommandLineOperations.java
test/jalview/commands/EditCommandTest.java
test/jalview/datamodel/AlignedCodonFrameTest.java
test/jalview/datamodel/AlignedCodonIteratorTest.java
test/jalview/datamodel/AlignedCodonTest.java
test/jalview/datamodel/AlignmentAnnotationTests.java
test/jalview/datamodel/AlignmentTest.java
test/jalview/datamodel/ColumnSelectionTest.java
test/jalview/datamodel/DBRefEntryTest.java
test/jalview/datamodel/MappingTest.java
test/jalview/datamodel/PDBEntryTest.java
test/jalview/datamodel/SearchResultsTest.java
test/jalview/datamodel/SeqCigarTest.java
test/jalview/datamodel/SequenceDummyTest.java
test/jalview/datamodel/SequenceTest.java
test/jalview/datamodel/xdb/embl/EmblFileTest.java
test/jalview/ext/jmol/PDBFileWithJmolTest.java
test/jalview/ext/paradise/TestAnnotate3D.java
test/jalview/ext/rbvi/chimera/ChimeraCommandsTest.java
test/jalview/ext/rbvi/chimera/ChimeraConnect.java
test/jalview/ext/rbvi/chimera/JalviewChimeraView.java
test/jalview/gui/AlignViewportTest.java
test/jalview/gui/AnnotationChooserTest.java
test/jalview/gui/FontChooserTest.java
test/jalview/gui/HelpTest.java
test/jalview/gui/JAL1353bugdemo.java
test/jalview/gui/JvSwingUtilsTest.java
test/jalview/gui/PDBSearchPanelTest.java
test/jalview/gui/PaintRefresherTest.java
test/jalview/gui/PopupMenuTest.java
test/jalview/gui/ProgressBarTest.java
test/jalview/gui/SequenceRendererTest.java
test/jalview/gui/StructureChooserTest.java
test/jalview/io/AnnotatedPDBFileInputTest.java
test/jalview/io/AnnotationFileIOTest.java
test/jalview/io/BioJsHTMLOutputTest.java
test/jalview/io/FileIOTester.java
test/jalview/io/Gff3tests.java
test/jalview/io/HtmlFileTest.java
test/jalview/io/JSONFileTest.java
test/jalview/io/Jalview2xmlTests.java
test/jalview/io/NewickFileTests.java
test/jalview/io/PhylipFileTests.java
test/jalview/io/RNAMLfileTest.java
test/jalview/io/StockholmFileTest.java
test/jalview/io/TCoffeeScoreFileTest.java
test/jalview/schemes/DnaCodonTests.java
test/jalview/schemes/ResiduePropertiesTest.java
test/jalview/schemes/ScoreMatrixPrinter.java
test/jalview/structure/Mapping.java
test/jalview/structure/StructureSelectionManagerTest.java
test/jalview/structures/models/AAStructureBindingModelTest.java
test/jalview/util/ColorUtilsTest.java
test/jalview/util/ComparisonTest.java
test/jalview/util/DBRefUtilsTest.java
test/jalview/util/MapListTest.java
test/jalview/util/MappingUtilsTest.java
test/jalview/util/QuickSortTest.java
test/jalview/util/ShiftListTest.java
test/jalview/util/StringUtilsTest.java
test/jalview/viewmodel/styles/ViewStyleTest.java
test/jalview/ws/PDBSequenceFetcherTest.java
test/jalview/ws/dbsources/PDBRestClientTest.java
test/jalview/ws/dbsources/UniprotTest.java
test/jalview/ws/gui/Jws2ParamView.java
test/jalview/ws/jabaws/DisorderAnnotExportImport.java
test/jalview/ws/jabaws/JalviewJabawsTestUtils.java
test/jalview/ws/jabaws/JpredJabaStructExportImport.java
test/jalview/ws/jabaws/MinJabawsClientTests.java
test/jalview/ws/jabaws/RNAStructExportImport.java
test/jalview/ws/jws2/ParameterUtilsTest.java
test/jalview/ws/rest/RestClientTest.java
test/jalview/ws/rest/ShmmrRSBSService.java
test/jalview/ws/seqfetcher/DasSequenceFetcher.java
test/jalview/ws/seqfetcher/DbRefFetcherTest.java