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JAL-2418 source formatting
[jalview.git]
/
src
/
jalview
/
analysis
/
scoremodels
/
SimilarityParams.java
diff --git
a/src/jalview/analysis/scoremodels/SimilarityParams.java
b/src/jalview/analysis/scoremodels/SimilarityParams.java
index
e5751ca
..
4d8c3fc
100644
(file)
--- a/
src/jalview/analysis/scoremodels/SimilarityParams.java
+++ b/
src/jalview/analysis/scoremodels/SimilarityParams.java
@@
-20,8
+20,8
@@
public class SimilarityParams implements SimilarityParamsI
* Based on Jalview's Comparison.PID method, which includes gaps and counts
* them as matching; it counts over the length of the shorter sequence
*/
* Based on Jalview's Comparison.PID method, which includes gaps and counts
* them as matching; it counts over the length of the shorter sequence
*/
- public static final SimilarityParamsI Jalview = new SimilarityParams(
- true, true, true, true);
+ public static final SimilarityParamsI Jalview = new SimilarityParams(true,
+ true, true, true);
/**
* 'SeqSpace' mode PCA calculation includes gaps but does not count them as
/**
* 'SeqSpace' mode PCA calculation includes gaps but does not count them as