+ // NOTE: this logic is different in the application. Need a better
+ // algorithm to define behaviour
+ // sets initial preferred height
+ // try and set height according to alignment
+ float sscaling = (float) ((av.getCharHeight() * av.getAlignment()
+ .getHeight()) / (1.0 * mheight));
+ if (sscaling > 0.5)
+ {
+ // if the alignment is too big then
+ // default is 0.5 split
+ height = seqandannot / 2;
+ }
+ else
+ {
+ // otherwise just set the panel so that one row of sequence is visible
+ height = -av.getCharHeight() * 1
+ + (int) (seqandannot * (1 - sscaling));
+ }