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Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
[jalview.git]
/
src
/
jalview
/
datamodel
/
Sequence.java
diff --git
a/src/jalview/datamodel/Sequence.java
b/src/jalview/datamodel/Sequence.java
index
23c3de7
..
5fa37e3
100755
(executable)
--- a/
src/jalview/datamodel/Sequence.java
+++ b/
src/jalview/datamodel/Sequence.java
@@
-708,6
+708,7
@@
public class Sequence implements SequenceI
{
tmp = new char[i];
System.arraycopy(sequence, 0, tmp, 0, i);
{
tmp = new char[i];
System.arraycopy(sequence, 0, tmp, 0, i);
+ j=sequence.length;
}
else
{
}
else
{
@@
-716,6
+717,9
@@
public class Sequence implements SequenceI
System.arraycopy(sequence, j, tmp, i, sequence.length - j);
}
boolean createNewDs = false;
System.arraycopy(sequence, j, tmp, i, sequence.length - j);
}
boolean createNewDs = false;
+ // TODO: take a look at the new dataset creation validation method below -
+ // this could become time comsuming for large sequences - consider making it
+ // more efficient
for (int s = i; s < j; s++)
{
if (jalview.schemes.ResidueProperties.aaIndex[sequence[s]] != 23)
for (int s = i; s < j; s++)
{
if (jalview.schemes.ResidueProperties.aaIndex[sequence[s]] != 23)