+ if (annotation != null)
+ {
+ Vector<AlignmentAnnotation> _annot = annotation;
+ annotation = null;
+ for (AlignmentAnnotation aa : _annot)
+ {
+ aa.sequenceRef = datasetSequence;
+ aa.adjustForAlignment(); // uses annotation's own record of
+ // sequence-column mapping
+ datasetSequence.addAlignmentAnnotation(aa);
+ }
+ }