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JAL-1705 align CDS and peptide products to transcripts
[jalview.git]
/
src
/
jalview
/
ext
/
ensembl
/
EnsemblSeqProxy.java
diff --git
a/src/jalview/ext/ensembl/EnsemblSeqProxy.java
b/src/jalview/ext/ensembl/EnsemblSeqProxy.java
index
77263ff
..
869a702
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblSeqProxy.java
+++ b/
src/jalview/ext/ensembl/EnsemblSeqProxy.java
@@
-343,6
+343,7
@@
public abstract class EnsemblSeqProxy extends EnsemblRestClient
int mappedDnaLength = getCdsRanges(dnaSeq, ranges);
int proteinLength = proteinSeq.getLength();
int mappedDnaLength = getCdsRanges(dnaSeq, ranges);
int proteinLength = proteinSeq.getLength();
+ int proteinEnd = proteinLength;
int proteinStart = 1;
/*
int proteinStart = 1;
/*
@@
-367,7
+368,7
@@
public abstract class EnsemblSeqProxy extends EnsemblRestClient
}
if (codesForResidues == proteinLength)
{
}
if (codesForResidues == proteinLength)
{
- proteinRange.add(new int[] { proteinStart, proteinLength });
+ proteinRange.add(new int[] { proteinStart, proteinEnd });
return new MapList(ranges, proteinRange, 3, 1);
}
return null;
return new MapList(ranges, proteinRange, 3, 1);
}
return null;