JAL-1705 align CDS and peptide products to transcripts
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 1 Mar 2016 12:09:47 +0000 (12:09 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 1 Mar 2016 12:09:47 +0000 (12:09 +0000)
commit1e8c7a9ab9f5da589d0aa2482fd2e3361c320d57
treef922005362a4a8fb4342293334d995b1799a0203
parent8c3de81e7cbcdeec7362d55381c3970bac146456
JAL-1705 align CDS and peptide products to transcripts
12 files changed:
src/jalview/datamodel/Sequence.java
src/jalview/ext/ensembl/EnsemblGene.java
src/jalview/ext/ensembl/EnsemblSeqProxy.java
src/jalview/gui/AlignFrame.java
src/jalview/schemes/FeatureColourScheme.java [deleted file]
src/jalview/schemes/FeatureSettingsAdapter.java [new file with mode: 0644]
src/jalview/util/MapList.java
src/jalview/util/MappingUtils.java
test/jalview/analysis/AlignmentUtilsTests.java
test/jalview/datamodel/SequenceTest.java
test/jalview/util/MapListTest.java
test/jalview/util/MappingUtilsTest.java