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v2
[jalview.git]
/
src
/
jalview
/
gui
/
Jalview2XML_V1.java
diff --git
a/src/jalview/gui/Jalview2XML_V1.java
b/src/jalview/gui/Jalview2XML_V1.java
index
64d00ff
..
e264b68
100755
(executable)
--- a/
src/jalview/gui/Jalview2XML_V1.java
+++ b/
src/jalview/gui/Jalview2XML_V1.java
@@
-271,7
+271,7
@@
public class Jalview2XML_V1
\r
for (int i = 0; i < JSEQ.length; i++)
\r
{
\r
\r
for (int i = 0; i < JSEQ.length; i++)
\r
{
\r
- af.viewport.setSequenceColour(af.viewport.alignment.getSequenceAt(i),
\r
+ af.viewport.setSequenceColour(af.viewport.getAlignment().getSequenceAt(i),
\r
new java.awt.Color(JSEQ[i].getColour()));
\r
}
\r
\r
new java.awt.Color(JSEQ[i].getColour()));
\r
}
\r
\r
@@
-371,7
+371,7
@@
public class Jalview2XML_V1
if (cs != null)
\r
{
\r
cs.setThreshold(view.getPidThreshold(), true);
\r
if (cs != null)
\r
{
\r
cs.setThreshold(view.getPidThreshold(), true);
\r
- cs.setConsensus(af.viewport.hconsensus);
\r
+ cs.setConsensus(af.viewport.getSequenceConsensusHash());
\r
}
\r
}
\r
\r
}
\r
}
\r
\r