- /**
- * List of readable format file extensions by application in order
- * corresponding to READABLE_FNAMES
- */
- // public static final String[] READABLE_EXTENSIONS = new String[] {
- // "fa, fasta, mfa, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa",
- // "sto,stk", "xml,rnaml", "phy", "json", ".gff2,gff3", "jar,jvp",
- // "html", "cif" };
-
- //
- // /**
- // * List of readable formats by application in order corresponding to
- // * READABLE_EXTENSIONS
- // */
- // public static final String[] READABLE_FNAMES = new String[] { "Fasta",
- // "Clustal", "PFAM", "MSF", "PIR", "BLC", "AMSA", "Stockholm", "RNAML",
- // "PHYLIP", "JSON", IdentifyFile.FeaturesFile,
- // "Jalview", HtmlFile.FILE_DESC, "mmCIF" };
-
- /**
- * List of valid format strings for use by callers of the formatSequences
- * method
- */
- // public static final String[] WRITEABLE_FORMATS = new String[] { "BLC",
- // "CLUSTAL", "FASTA", "MSF", "PileUp", "PIR", "PFAM", "AMSA", "STH",
- // "PHYLIP", "JSON" };
-
- /**
- * List of extensions corresponding to file format types in WRITABLE_FNAMES
- * that are writable by the application.
- */
- // public static final String[] WRITABLE_EXTENSIONS = new String[] {
- // "fa, fasta, mfa, fastq", "aln", "pfam", "msf", "pir", "blc", "amsa",
- // "sto,stk", "phy", "json", "jvp" };