+ loadtime += System.currentTimeMillis();
+ // TODO: Estimate percentage of memory used by a newly loaded alignment - warn if more memory will be needed to work with it
+ // System.gc();
+ memused = memused - (rt.maxMemory() - rt.totalMemory() + rt.freeMemory()); // difference in free memory after load
+ if (Desktop.desktop != null && Desktop.desktop.isShowMemoryUsage())
+ {
+ if (alignFrame != null)
+ {
+ AlignmentI al = alignFrame.getViewport().getAlignment();
+
+ System.out.println("Loaded '" + title + "' in "
+ + (loadtime / 1000.0) + "s, took an additional "
+ + (1.0 * memused / (1024.0 * 1024.0)) + " MB ("
+ + al.getHeight() + " seqs by " + al.getWidth() + " cols)");
+ } else {
+ // report that we didn't load anything probably due to an out of memory error
+ System.out.println("Failed to load '"+title+"' in "
+ + (loadtime / 1000.0) + "s, took an additional "
+ + (1.0 * memused / (1024.0 * 1024.0)) + " MB (alignment is null)");
+ }
+ }
+ // remove the visual delay indicator