+ /**
+ * Load a (file, protocol) source of unknown type
+ *
+ * @param file
+ * @param protocol
+ */
+ public void LoadFile(String file, String protocol)
+ {
+ LoadFile(file, protocol, null);
+ }
+
+ /**
+ * Load alignment from (file, protocol) and wait till loaded
+ *
+ * @param file
+ * @param protocol
+ * @return alignFrame constructed from file contents
+ */
+ public AlignFrame LoadFileWaitTillLoaded(String file, String protocol)
+ {
+ return LoadFileWaitTillLoaded(file, protocol, null);
+ }
+
+ /**
+ * Load alignment from (file, protocol) of type format and wait till loaded
+ *
+ * @param file
+ * @param protocol
+ * @param format
+ * @return alignFrame constructed from file contents
+ */