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JAL-845 implement alignment of protein to match cDNA alignment
[jalview.git]
/
src
/
jalview
/
io
/
RnamlFile.java
diff --git
a/src/jalview/io/RnamlFile.java
b/src/jalview/io/RnamlFile.java
index
9f0c8d5
..
c075fda
100644
(file)
--- a/
src/jalview/io/RnamlFile.java
+++ b/
src/jalview/io/RnamlFile.java
@@
-167,8
+167,11
@@
public class RnamlFile extends AlignFile
annot[k]).charAt(0), 0f);
}
annot[k]).charAt(0), 0f);
}
- AlignmentAnnotation align = new AlignmentAnnotation("Sec. str.",
- current.getID(), ann);
+ AlignmentAnnotation align = new AlignmentAnnotation(
+ "Secondary Structure",
+ current.getID().trim().length() > 0 ? "Secondary Structure for "
+ + current.getID()
+ : "", ann);
seqs[i].addAlignmentAnnotation(align);
seqs[i].setRNA(result.get(i));
seqs[i].addAlignmentAnnotation(align);
seqs[i].setRNA(result.get(i));