JAL-845 implement alignment of protein to match cDNA alignment
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 3 Mar 2015 10:35:19 +0000 (10:35 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 3 Mar 2015 10:35:19 +0000 (10:35 +0000)
commit4924c107e70d763821067bcb3e1586bc14589918
tree574c98fc7e72d8edbaed7024a20ecefe24882cef
parent97a31ae1fe3095b9d332f655103e334342ee9a19
JAL-845 implement alignment of protein to match cDNA alignment
22 files changed:
src/jalview/analysis/AlignmentUtils.java
src/jalview/api/SplitContainerI.java
src/jalview/datamodel/AlignedCodon.java
src/jalview/datamodel/AlignedCodonFrame.java
src/jalview/datamodel/Alignment.java
src/jalview/datamodel/IncompleteCodonException.java [new file with mode: 0644]
src/jalview/datamodel/Mapping.java
src/jalview/datamodel/SearchResults.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/Jalview2XML.java
src/jalview/gui/SplitFrame.java
src/jalview/io/VamsasAppDatastore.java
src/jalview/io/vamsas/Rangetype.java
src/jalview/jbgui/GSplitFrame.java
src/jalview/util/MapList.java
src/jalview/util/MappingUtils.java
src/jalview/ws/AWSThread.java
src/jalview/ws/jws2/MsaWSThread.java
test/jalview/analysis/AlignmentUtilsTests.java
test/jalview/datamodel/AlignedCodonIteratorTest.java [new file with mode: 0644]
test/jalview/datamodel/SearchResultsTest.java
test/jalview/util/MapListTest.java